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    LOC543286 alpha-amylase/trypsin inhibitor CM16-like [ Triticum aestivum (bread wheat) ]

    Gene ID: 543286, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC543286
    Gene description
    alpha-amylase/trypsin inhibitor CM16-like
    See related
    EnsemblRapid:TraesCS4B03G0849000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Triticum aestivum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
    Also known as
    ATI
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    Genomic context

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    See LOC543286 in Genome Data Viewer
    Location:
    chromosome: 4B
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current IWGSC CS RefSeq v2.1 (GCF_018294505.1) 4B NC_057804.1 (617500080..617500739, complement)

    Chromosome 4B - NC_057804.1Genomic Context describing neighboring genes Neighboring gene respiratory burst oxidase homolog protein B-like Neighboring gene uncharacterized LOC123089419 Neighboring gene alpha-amylase/trypsin inhibitor CM3-like Neighboring gene serine/threonine-protein kinase BSK1-2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057804.1 Chromosome 4B Reference IWGSC CS RefSeq v2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and characterization of a cDNA encoding the wheat (Triticum durum Desf.) CM16 protein. Gautier MF, et al. Plant Mol Biol, 1990 Mar. PMID 2102817
    2. Characterization of a cDNA clone encoding the Triticum aestivum L. CM16 protein: homology with the Triticum durum Desf. sequence. Lullien V, et al. Plant Mol Biol, 1991 Feb. PMID 1893108
    3. Cloning of cDNA and chromosomal location of genes encoding the three types of subunits of the wheat tetrameric inhibitor of insect alpha-amylase. García-Maroto F, et al. Plant Mol Biol, 1990 May. PMID 2102861
    4. Tissue expression map of a large number of expressed sequence tags and its application to in silico screening of stress response genes in common wheat. Mochida K, et al. Mol Genet Genomics, 2006 Sep. PMID 16832693
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-amylase/trypsin inhibitor CM16
    Names
    CM16 protein
    alpha amylase-trypsin inhibitor
    chloroform/methanol-soluble protein CM16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001405754.1 → NP_001392683.1  alpha-amylase/trypsin inhibitor CM16 precursor

      Status: VALIDATED

      Source sequence(s)
      CD886300, CJ527905, HAAB01058748
      UniProtKB/Swiss-Prot
      P16159
      UniProtKB/TrEMBL
      A0A4P8DL87, B5B0D5

    RefSeqs of Annotated Genomes: Triticum aestivum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IWGSC CS RefSeq v2.1 Primary Assembly

    Genomic

    1. NC_057804.1 Reference IWGSC CS RefSeq v2.1 Primary Assembly

      Range
      617500080..617500739 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044515615.1 → XP_044371550.1  alpha-amylase/trypsin inhibitor CM16

      Related
      TraesCS4B03G0849000, TraesCS4B03G0849000.1
      Conserved Domains (1) summary
      cd00261
      Location:28 → 134
      AAI_SS; Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P16159.1 GenPept UniProtKB/Swiss-Prot:P16159

    Gene LinkOut

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    Molecular Biology Databases