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    SPH1 S-protein homologue 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827324, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SPH1
    Official Full Name
    S-protein homologue 1
    Primary source
    TAIR:AT4G16295
    Locus tag
    AT4G16295
    See related
    Araport:AT4G16295
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    S-protein homologue 1
    Summary
    self-incompatibility (S) protein homolog, expressed at very low levels in floral buds
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    Genomic context

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    See SPH1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (9215680..9216135, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene peroxidase superfamily protein Neighboring gene flowering time control protein FCA Neighboring gene LSD1-like 3 Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of Arabidopsis genome sequence reveals a large new gene family in plants. Ride JP, et al. Plant Mol Biol, 1999 Mar. PMID 10344198
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen-pistil interaction ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    S-protein homologue 1
    NP_680714.1
    • S-protein homologue 1 (SPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen-pistil interaction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT4G29035.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9215680..9216135 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_148348.1 → NP_680714.1  S-protein homologue 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_680714.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JLS0
      Conserved Domains (1) summary
      pfam05938
      Location:42 → 135
      Self-incomp_S1; Plant self-incompatibility protein S1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JLS0.1

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