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    CG42238 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 7354398, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CG42238provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0250867
    Locus tag
    Dmel_CG42238
    See related
    AllianceGenome:FB:FBgn0250867
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG9266; Dmel\CG42238
    Orthologs
    all
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    Genomic context

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    See CG42238 in Genome Data Viewer
    Location:
    38F6-39A1; 2-54 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (20965520..21052164, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (20965520..21052164, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44606 Neighboring gene ncRNA Neighboring gene Integrin betanu subunit Neighboring gene uncharacterized protein Neighboring gene torn and diminished rhabdomeres

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A mechanism for circadian control of pacemaker neuron excitability. Ruben M, et al. J Biol Rhythms, 2012 Oct. PMID 23010658, Free PMC Article
    2. Integrative genomic analysis reveals novel regulatory mechanisms of eyeless during Drosophila eye development. Yeung K, et al. Nucleic Acids Res, 2018 Dec 14. PMID 30295802, Free PMC Article
    3. A screen identifying genes responsive to Dpp and Wg signaling in the Drosophila developing wing. Hadar N, et al. Gene, 2012 Feb 15. PMID 22192913
    4. Highly constrained intergenic Drosophila ultraconserved elements are candidate ncRNAs. Kern AD, et al. Genome Biol Evol, 2015 Jan 23. PMID 25618141, Free PMC Article
    5. The Landscape of the DNA Transposons in the Genome of the Horezu_LaPeri Strain of Drosophila melanogaster. Bologa AM, et al. Insects, 2023 May 25. PMID 37367310, Free PMC Article

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    mobile_element

    • Loc: c20981725-20981688 mobile_element_type = transposon:1731{}5381

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42238-PA
    CG42238-PB
    CG42238-PC
    CG42238-PD
    CG42238-PE

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      20965520..21052164 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001273724.1 → NP_001260653.1  uncharacterized protein Dmel_CG42238, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260653.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7YZX8

    2. NM_001144373.2 → NP_001137845.1  uncharacterized protein Dmel_CG42238, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001137845.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7YZX7, Q95S78

    3. NM_001316403.1 → NP_001303332.1  uncharacterized protein Dmel_CG42238, isoform E [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7YZX8

    4. NM_001144374.2 → NP_001137846.1  uncharacterized protein Dmel_CG42238, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001137846.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7YZX8

    5. NM_001273725.1 → NP_001260654.1  uncharacterized protein Dmel_CG42238, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260654.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7YZX8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B7YZX7 B7YZX7
    B7YZX8 B7YZX8

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