lyg Lysozyme g [Salmo salar (Atlantic salmon)] - Gene

Summary

Gene symbol: lyg
Gene description: Lysozyme g
See related: Ensembl:ENSSSAG00000064636
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Salmo salar
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as: isg12(2)
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Genomic context

Location:: chromosome: ssa09

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
102	current	Ssal_v3.1 (GCF_905237065.1)	ssa09	NC_059450.1 (18042147..18048184, complement)
100	previous assembly	ICSASG_v2 (GCF_000233375.1)	ssa09	NC_027308.1 (18654354..18660298, complement)

Chromosome ssa09 - NC_059450.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables lysozyme activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in defense response to Gram-positive bacterium	IEA Inferred from Electronic Annotation more info	PubMed
involved_in peptidoglycan catabolic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: Lysozyme g; lysozyme g

Names: putative ISG12(2) protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001146413.2 → NP_001139885.1 Lysozyme g

See identical proteins and their annotated locations for NP_001139885.1

Status: PROVISIONAL

Source sequence(s)

BT056607

UniProtKB/TrEMBL

B9ELT2

Related

ENSSSAP00000074222.2, ENSSSAT00000107561.2

Conserved Domains (2) summary

pfam06140
Location:248 → 279

Ifi-6-16; Interferon-induced 6-16 family

cl00222
Location:19 → 190

lysozyme_like; lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. ...