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    nsd2 nuclear receptor binding SET domain protein 2 [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 108263739, updated on 20-Aug-2024

    Summary

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    Gene symbol
    nsd2
    Gene description
    nuclear receptor binding SET domain protein 2
    See related
    EnsemblRapid:ENSIPUG00020012085
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Also known as
    whsc1
    Orthologs
    zebrafish all
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    Genomic context

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    See nsd2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Coco_2.0 (GCF_001660625.3) 3 NC_030418.2 (14651882..14674694, complement)
    101 previous assembly IpCoco_1.2 (GCF_001660625.2) 3 NC_030418.1 (22211069..22233752)

    Chromosome 3 - NC_030418.2Genomic Context describing neighboring genes Neighboring gene C9orf72-SMCR8 complex subunit Neighboring gene KIAA1109 ortholog Neighboring gene leucine zipper-EF-hand containing transmembrane protein 1 Neighboring gene fibroblast growth factor receptor 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K36 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase NSD2
    Names
    Histone-lysine N-methyltransferase NSD2
    Wolf-Hirschhorn syndrome candidate 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coco_2.0 Primary Assembly

    Genomic

    1. NC_030418.2 Reference Coco_2.0 Primary Assembly

      Range
      14651882..14674694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047154279.2 → XP_047010235.1  histone-lysine N-methyltransferase NSD2 isoform X1

      UniProtKB/TrEMBL
      A0A2D0QPB0
      Related
      ENSIPUP00020023738.1, ENSIPUT00020027921.1

    2. XM_017464824.3 → XP_017320313.1  histone-lysine N-methyltransferase NSD2 isoform X1

      UniProtKB/TrEMBL
      A0A2D0QPB0

    3. XM_047154280.2 → XP_047010236.1  histone-lysine N-methyltransferase NSD2 isoform X2

      UniProtKB/TrEMBL
      W5UF11
      Related
      ENSIPUP00020023745.1, ENSIPUT00020027928.1

    4. XM_047154278.1 → XP_047010234.1  histone-lysine N-methyltransferase NSD2 isoform X1

      UniProtKB/TrEMBL
      A0A2D0QPB0

    5. XM_047154277.2 → XP_047010233.1  histone-lysine N-methyltransferase NSD2 isoform X1

      UniProtKB/TrEMBL
      A0A2D0QPB0
    Nucleotide Protein
    Heading Accession and Version

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