The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

   Range

   41452538..41498064

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_040695999.2 → XP_040551933.2  LOW QUALITY PROTEIN: collagen alpha-6(VI) chain isoform X1

   Related

   ENSGALP00010026505.1, ENSGALT00010044525.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

   Range

   41506285..41557509

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_046911985.1 → XP_046767941.1  collagen alpha-6(VI) chain isoform X5

2. XM_040662833.2 → XP_040518767.1  collagen alpha-6(VI) chain isoform X6

   Conserved Domains (6) summary

   smart00131
   Location:2486 → 2538

   KU; BPTI/Kunitz family of serine protease inhibitors

   smart00327
   Location:1387 → 1570

   VWA; von Willebrand factor (vWF) type A domain

   PHA03169
   Location:1636 → 1826

   PHA03169; hypothetical protein; Provisional

   cd01450
   Location:1003 → 1158

   vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

   cd01472
   Location:32 → 197

   vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...

   cl00057
   Location:428 → 594

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

3. XM_046911986.1 → XP_046767942.1  collagen alpha-6(VI) chain isoform X5

4. XM_040662832.2 → XP_040518766.1  collagen alpha-6(VI) chain isoform X5

   Conserved Domains (6) summary

   smart00131
   Location:2487 → 2539

   KU; BPTI/Kunitz family of serine protease inhibitors

   smart00327
   Location:1388 → 1571

   VWA; von Willebrand factor (vWF) type A domain

   PHA03169
   Location:1637 → 1827

   PHA03169; hypothetical protein; Provisional

   cd01450
   Location:1004 → 1159

   vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

   cd01472
   Location:33 → 198

   vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...

   cl00057
   Location:429 → 595

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

5. XM_040662831.2 → XP_040518765.1  collagen alpha-6(VI) chain isoform X4

   Conserved Domains (6) summary

   smart00131
   Location:2502 → 2554

   KU; BPTI/Kunitz family of serine protease inhibitors

   smart00327
   Location:1404 → 1587

   VWA; von Willebrand factor (vWF) type A domain

   PHA03169
   Location:1653 → 1843

   PHA03169; hypothetical protein; Provisional

   cd01450
   Location:1020 → 1175

   vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

   cd01472
   Location:49 → 214

   vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...

   cl00057
   Location:445 → 611

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

6. XM_040662829.2 → XP_040518763.1  collagen alpha-6(VI) chain isoform X2

   Conserved Domains (6) summary

   smart00131
   Location:2503 → 2555

   KU; BPTI/Kunitz family of serine protease inhibitors

   smart00327
   Location:1404 → 1587

   VWA; von Willebrand factor (vWF) type A domain

   PHA03169
   Location:1653 → 1843

   PHA03169; hypothetical protein; Provisional

   cd01450
   Location:1020 → 1175

   vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

   cd01472
   Location:49 → 214

   vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...

   cl00057
   Location:445 → 611

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

7. XM_040662830.2 → XP_040518764.1  collagen alpha-6(VI) chain isoform X3

   Conserved Domains (6) summary

   smart00131
   Location:2502 → 2554

   KU; BPTI/Kunitz family of serine protease inhibitors

   smart00327
   Location:1403 → 1586

   VWA; von Willebrand factor (vWF) type A domain

   PHA03169
   Location:1652 → 1842

   PHA03169; hypothetical protein; Provisional

   cd01450
   Location:1019 → 1174

   vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

   cd01472
   Location:48 → 213

   vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...

   cl00057
   Location:444 → 610

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

RNA

1. XR_005846094.1 RNA Sequence