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    OLFM1 olfactomedin 1 [ Gallus gallus (chicken) ]

    Gene ID: 395535, updated on 17-Aug-2024

    Summary

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    Symbol
    OLFM1provided by CGNC
    Full Name
    olfactomedin 1provided by CGNC
    Primary source
    CGNC:1803
    See related
    Ensembl:ENSGALG00010028447
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    NOEL; NOEL1; NOELIN-1; olfactomedin-1
    Orthologs
    human mouse all
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    Genomic context

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    See OLFM1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (8207533..8234959)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (7618552..7645946)

    Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121107110 Neighboring gene collagen type V alpha 1 chain Neighboring gene uncharacterized LOC121107089 Neighboring gene uncharacterized LOC121107061 Neighboring gene protein phosphatase 1 regulatory subunit 26

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Olfactomedin-1 activity identifies a cell invasion checkpoint during epithelial-mesenchymal transition in the chick embryonic heart. Lencinas A, et al. Dis Model Mech, 2013 May. PMID 23264563, Free PMC Article
    2. Noelin-1 is a secreted glycoprotein involved in generation of the neural crest. Barembaum M, et al. Nat Cell Biol, 2000 Apr. PMID 10783240
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OLFM1 is present and necessary during epithelial-mesenchymal transition in the embryonic chick heart.
      Title: Olfactomedin-1 activity identifies a cell invasion checkpoint during epithelial-mesenchymal transition in the chick embryonic heart.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    noelin
    Names
    neuronal olfactomedin-related ER localized protein
    pancortin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204767.2 → NP_990098.1  noelin precursor

      See identical proteins and their annotated locations for NP_990098.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000308
      UniProtKB/Swiss-Prot
      Q9I9K5, Q9IAK4
      Related
      ENSGALP00010042339.1, ENSGALT00010068897.1
      Conserved Domains (3) summary
      smart00284
      Location:228 → 478
      OLF; Olfactomedin-like domains
      PRK03918
      Location:92 → 217
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12308
      Location:56 → 152
      Noelin-1; Neurogenesis glycoprotein

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      8207533..8234959
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015279317.4 → XP_015134803.1  noelin isoform X1

      UniProtKB/Swiss-Prot
      Q9IAK4
      Related
      ENSGALP00010042340.1, ENSGALT00010068898.1
      Conserved Domains (3) summary
      smart00284
      Location:200 → 450
      OLF; Olfactomedin-like domains
      PRK03918
      Location:64 → 189
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12308
      Location:28 → 124
      Noelin-1; Neurogenesis glycoprotein

    2. XM_046901644.1 → XP_046757600.1  noelin isoform X3

    3. XM_046901643.1 → XP_046757599.1  noelin isoform X2

      UniProtKB/TrEMBL
      A0A8V1AIN0
      Related
      ENSGALP00010042338.1, ENSGALT00010068896.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      7618552..7645946
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046928714.1 → XP_046784670.1  noelin isoform X1

    2. XM_046928716.1 → XP_046784672.1  noelin isoform X3

    3. XM_046928715.1 → XP_046784671.1  noelin isoform X2

      UniProtKB/TrEMBL
      A0A8V1AIN0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9IAK4.1 GenPept UniProtKB/Swiss-Prot:Q9IAK4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials