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    PHATRDRAFT_22955 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

    Gene ID: 7195299, updated on 21-Dec-2023

    Summary

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    Gene symbol
    PHATRDRAFT_22955
    Gene description
    hypothetical protein
    Locus tag
    PHATRDRAFT_22955
    Gene type
    protein coding
    RNA name
    predicted protein
    RefSeq status
    PROVISIONAL
    Organism
    Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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    Genomic context

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    See PHATRDRAFT_22955 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    4
    Sequence:
    Chromosome: 20; NC_011688.1 (431062..432660)

    Chromosome 20 - NC_011688.1Genomic Context describing neighboring genes Neighboring gene l-threonine ammonia-lyase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene protein fucoxanthin chlorophyll a/c protein Neighboring gene 3-hydroxyacyl-coenzyme A dehydrogenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_011688.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pantoate-beta-alanine ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pantothenate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011688.1 Reference assembly

      Range
      431062..432660
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002183571.1 → XP_002183607.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

      See identical proteins and their annotated locations for XP_002183607.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B7G9B7
      Conserved Domains (1) summary
      PLN02660
      Location:16 → 311
      PLN02660; pantoate--beta-alanine ligase
    Nucleotide Protein
    Heading Accession and Version

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