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    PHATRDRAFT_37130 predicted protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

    Gene ID: 7202257, updated on 21-Dec-2023

    Summary

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    Gene symbol
    PHATRDRAFT_37130
    Gene description
    predicted protein
    Locus tag
    PHATRDRAFT_37130
    Gene type
    protein coding
    RNA name
    predicted protein
    RefSeq status
    PROVISIONAL
    Organism
    Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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    Genomic context

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    See PHATRDRAFT_37130 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    1
    Sequence:
    Chromosome: 12; NC_011680.1 (229101..230478)

    Chromosome 12 - NC_011680.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene biotin synthase Neighboring gene predicted protein Neighboring gene predicted protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_011680.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA-DNA hybrid ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011680.1 Reference assembly

      Range
      229101..230478
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002181125.1 → XP_002181161.1  predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]

      See identical proteins and their annotated locations for XP_002181161.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B7G278
      Conserved Domains (2) summary
      smart00513
      Location:182 → 216
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      pfam13456
      Location:344 → 430
      RVT_3; Reverse transcriptase-like
    Nucleotide Protein
    Heading Accession and Version

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