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    PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [ Equus asinus (ass) ]

    Gene ID: 106839342, updated on 13-Mar-2024

    Summary

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    Gene symbol
    PLOD3
    Gene description
    procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
    See related
    Ensembl:ENSEASG00005016919
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus asinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See PLOD3 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    101 current ASM1607732v2 (GCF_016077325.2) 14 NC_052190.1 (29641716..29649552, complement)
    100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638094.1 (1478875..1486752)

    Chromosome 14 - NC_052190.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123276897 Neighboring gene monoacylglycerol O-acyltransferase 3 Neighboring gene zinc finger HIT-type containing 1 Neighboring gene uncharacterized LOC123276809 Neighboring gene uncharacterized LOC123276808 Neighboring gene claudin 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables procollagen glucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables procollagen-lysine 5-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-lysine hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1607732v2

    Genomic

    1. NC_052190.1 Reference ASM1607732v2

      Range
      29641716..29649552 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044746976.1 → XP_044602911.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 isoform X1

      UniProtKB/TrEMBL
      A0A8C4MD41
      Conserved Domains (1) summary
      smart00702
      Location:609 → 772
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

    2. XM_044746977.1 → XP_044602912.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 isoform X2

      UniProtKB/TrEMBL
      A0A8C4MD41
      Related
      ENSEASP00005024869.2, ENSEAST00005026988.2
      Conserved Domains (1) summary
      smart00702
      Location:577 → 740
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    Nucleotide Protein
    Heading Accession and Version

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