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    PLS3 plastin 3 [ Varanus komodoensis (Komodo dragon) ]

    Gene ID: 123034939, updated on 22-Mar-2024

    Summary

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    Gene symbol
    PLS3
    Gene description
    plastin 3
    See related
    Ensembl:ENSVKKG00000010560
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Varanus komodoensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
    Orthologs
    human mouse all
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    Genomic context

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    See PLS3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025336401.1 (1663612..1712325)

    NW_025336401.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeats and calponin homology domain containing 2 Neighboring gene UAP56-interacting factor-like Neighboring gene nyctalopin-like Neighboring gene angiotensin II receptor type 2 Neighboring gene solute carrier family 6 member 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_025336401 Unplaced Scaffold Reference ASM479886v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in actin filament network formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in actin filament bundle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plastin-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM479886v1

    Genomic

    1. NW_025336401.1 Reference ASM479886v1

      Range
      1663612..1712325
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044452723.1 → XP_044308658.1  plastin-3

      UniProtKB/TrEMBL
      A0A8D2L1L4
      Related
      ENSVKKP00000015431.1, ENSVKKT00000015801.1
      Conserved Domains (1) summary
      COG5069
      Location:17 → 621
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

    2. XM_044452724.1 → XP_044308659.1  plastin-3

      UniProtKB/TrEMBL
      A0A8D2L1L4
      Conserved Domains (1) summary
      COG5069
      Location:17 → 621
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    Nucleotide Protein
    Heading Accession and Version

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