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    NFIB nuclear factor I B [ Varanus komodoensis (Komodo dragon) ]

    Gene ID: 123022206, updated on 22-Mar-2024

    Summary

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    Gene symbol
    NFIB
    Gene description
    nuclear factor I B
    Locus tag
    EYD10_09166
    See related
    Ensembl:ENSVKKG00000014616
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Varanus komodoensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
    Orthologs
    human mouse all
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    Genomic context

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    See NFIB in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025335550.1 (13436390..13650052, complement)

    NW_025335550.1Genomic Context describing neighboring genes Neighboring gene carbohydrate sulfotransferase 6-like Neighboring gene multiple PDZ domain crumbs cell polarity complex component Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene transfer RNA histidin (anticodon GUG)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_025335550 Unplaced Scaffold Reference ASM479886v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear factor 1 B-type
    Names
    Nuclear factor 1 B-type

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM479886v1

    Genomic

    1. NW_025335550.1 Reference ASM479886v1

      Range
      13436390..13650052 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044427761.1 → XP_044283696.1  nuclear factor 1 B-type isoform X2

      UniProtKB/TrEMBL
      A0A8D2LGW1, A0A8D2LH56
      Related
      ENSVKKP00000021885.1, ENSVKKT00000022431.1
      Conserved Domains (3) summary
      PHA03247
      Location:260 → 484
      PHA03247; large tegument protein UL36; Provisional
      pfam10524
      Location:7 → 43
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:64 → 172
      MH1; N-terminal Mad Homology 1 (MH1) domain

    2. XM_044427760.1 → XP_044283695.1  nuclear factor 1 B-type isoform X1

      UniProtKB/TrEMBL
      A0A8D2LGA4, A0A8D2LGW1
      Conserved Domains (3) summary
      PHA03247
      Location:264 → 488
      PHA03247; large tegument protein UL36; Provisional
      pfam10524
      Location:10 → 47
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:68 → 176
      MH1; N-terminal Mad Homology 1 (MH1) domain

    3. XM_044427759.1 → XP_044283694.1  nuclear factor 1 B-type isoform X1

      UniProtKB/TrEMBL
      A0A8D2LGA4, A0A8D2LGW1
      Conserved Domains (3) summary
      PHA03247
      Location:264 → 488
      PHA03247; large tegument protein UL36; Provisional
      pfam10524
      Location:10 → 47
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:68 → 176
      MH1; N-terminal Mad Homology 1 (MH1) domain

    4. XM_044427762.1 → XP_044283697.1  nuclear factor 1 B-type isoform X3

      UniProtKB/TrEMBL
      A0A8D2LGW1
      Conserved Domains (2) summary
      pfam10524
      Location:10 → 47
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:68 → 176
      MH1; N-terminal Mad Homology 1 (MH1) domain

    5. XM_044427757.1 → XP_044283692.1  nuclear factor 1 B-type isoform X1

      UniProtKB/TrEMBL
      A0A8D2LGA4, A0A8D2LGW1
      Related
      ENSVKKP00000021890.1, ENSVKKT00000022436.1
      Conserved Domains (3) summary
      PHA03247
      Location:264 → 488
      PHA03247; large tegument protein UL36; Provisional
      pfam10524
      Location:10 → 47
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:68 → 176
      MH1; N-terminal Mad Homology 1 (MH1) domain

    6. XM_044427765.1 → XP_044283700.1  nuclear factor 1 B-type isoform X6

      UniProtKB/TrEMBL
      A0A8D2LGW1
      Related
      ENSVKKP00000021887.1, ENSVKKT00000022433.1
      Conserved Domains (2) summary
      pfam10524
      Location:10 → 47
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:68 → 176
      MH1; N-terminal Mad Homology 1 (MH1) domain

    7. XM_044427764.1 → XP_044283699.1  nuclear factor 1 B-type isoform X5

      UniProtKB/TrEMBL
      A0A8D2LGW1
      Conserved Domains (2) summary
      pfam10524
      Location:10 → 47
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:68 → 176
      MH1; N-terminal Mad Homology 1 (MH1) domain

    8. XM_044427763.1 → XP_044283698.1  nuclear factor 1 B-type isoform X4

      UniProtKB/TrEMBL
      A0A8D2LGW1
      Conserved Domains (3) summary
      PHA03247
      Location:264 → 488
      PHA03247; large tegument protein UL36; Provisional
      pfam10524
      Location:10 → 47
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:68 → 176
      MH1; N-terminal Mad Homology 1 (MH1) domain

    9. XM_044427766.1 → XP_044283701.1  nuclear factor 1 B-type isoform X7

      UniProtKB/TrEMBL
      A0A8D2LGW1
      Conserved Domains (2) summary
      pfam10524
      Location:10 → 47
      NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
      cl00055
      Location:68 → 176
      MH1; N-terminal Mad Homology 1 (MH1) domain

    10. XM_044427767.1 → XP_044283702.1  nuclear factor 1 B-type isoform X8

    Nucleotide Protein
    Heading Accession and Version

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