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    CHD9 chromodomain helicase DNA binding protein 9 [ Varanus komodoensis (Komodo dragon) ]

    Gene ID: 123022199, updated on 22-Mar-2024

    Summary

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    Gene symbol
    CHD9
    Gene description
    chromodomain helicase DNA binding protein 9
    Locus tag
    EYD10_09072
    See related
    Ensembl:ENSVKKG00000003603
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Varanus komodoensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
    Orthologs
    human mouse all
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    Genomic context

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    See CHD9 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    43
    Annotation release Status Assembly Chr Location
    100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025335550.1 (6879368..6949104)

    NW_025335550.1Genomic Context describing neighboring genes Neighboring gene spalt like transcription factor 1 Neighboring gene TOX high mobility group box family member 3 Neighboring gene translation initiation factor IF-2-like Neighboring gene RB transcriptional corepressor like 2 Neighboring gene AKT interacting protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_025335550 Unplaced Scaffold Reference ASM479886v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 9

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM479886v1

    Genomic

    1. NW_025335550.1 Reference ASM479886v1

      Range
      6879368..6949104
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044427736.1 → XP_044283671.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8D2Q594
      Related
      ENSVKKP00000019815.1, ENSVKKT00000020302.1
      Conserved Domains (5) summary
      PTZ00121
      Location:467 → 750
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2554 → 2598
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:854 → 1380
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:765 → 823
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:681 → 745
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    2. XM_044427738.1 → XP_044283673.1  chromodomain-helicase-DNA-binding protein 9 isoform X3

      UniProtKB/TrEMBL
      A0A8D2Q594
      Related
      ENSVKKP00000019829.1, ENSVKKT00000020316.1
      Conserved Domains (5) summary
      PTZ00121
      Location:467 → 750
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2545 → 2589
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:854 → 1380
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:765 → 823
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:681 → 745
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    3. XM_044427739.1 → XP_044283674.1  chromodomain-helicase-DNA-binding protein 9 isoform X4

      UniProtKB/TrEMBL
      A0A8D2Q594
      Conserved Domains (5) summary
      PTZ00121
      Location:467 → 750
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2538 → 2582
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:854 → 1380
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:765 → 823
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:681 → 745
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    4. XM_044427741.1 → XP_044283676.1  chromodomain-helicase-DNA-binding protein 9 isoform X6

      UniProtKB/TrEMBL
      A0A8D2Q594
      Conserved Domains (5) summary
      PTZ00121
      Location:467 → 750
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2529 → 2573
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:854 → 1380
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:765 → 823
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:681 → 745
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    5. XM_044427737.1 → XP_044283672.1  chromodomain-helicase-DNA-binding protein 9 isoform X2

      UniProtKB/TrEMBL
      A0A8D2Q594
      Conserved Domains (5) summary
      PTZ00121
      Location:467 → 750
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2553 → 2597
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:854 → 1380
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:765 → 823
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:681 → 745
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    6. XM_044427740.1 → XP_044283675.1  chromodomain-helicase-DNA-binding protein 9 isoform X5

      UniProtKB/TrEMBL
      A0A8D2Q594
      Conserved Domains (5) summary
      PTZ00121
      Location:467 → 750
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2537 → 2581
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:854 → 1380
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:765 → 823
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:681 → 745
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    7. XM_044427743.1 → XP_044283678.1  chromodomain-helicase-DNA-binding protein 9 isoform X8

      UniProtKB/TrEMBL
      A0A8D2LF13
      Conserved Domains (4) summary
      smart00592
      Location:2074 → 2118
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:390 → 916
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:301 → 359
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:217 → 281
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    8. XM_044427742.1 → XP_044283677.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

      UniProtKB/TrEMBL
      A0A8D2LF13
      Related
      ENSVKKP00000020609.1, ENSVKKT00000021115.1
      Conserved Domains (5) summary
      smart00592
      Location:2090 → 2134
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:390 → 916
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:301 → 359
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:217 → 281
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cl28899
      Location:391 → 612
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    9. XM_044427744.1 → XP_044283679.1  chromodomain-helicase-DNA-binding protein 9 isoform X9

      UniProtKB/TrEMBL
      A0A8D2LF13
      Conserved Domains (4) summary
      smart00592
      Location:2054 → 2098
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:354 → 880
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:265 → 323
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:181 → 245
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    RNA

    1. XR_006414493.1 RNA Sequence

      Related
      ENSVKKT00000020667.1
    Nucleotide Protein
    Heading Accession and Version

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