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    CALB1 calbindin 1 [ Bufo gargarizans (Asiatic toad) ]

    Gene ID: 122939599, updated on 22-Mar-2024

    Summary

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    Gene symbol
    CALB1
    Gene description
    calbindin 1
    See related
    EnsemblRapid:ENSBGGG00000017793
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bufo gargarizans
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo
    Orthologs
    human mouse all
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    Genomic context

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    See CALB1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current ASM1485885v1 (GCF_014858855.1) 5 NC_058084.1 (78476774..78547105, complement)

    Chromosome 5 - NC_058084.1Genomic Context describing neighboring genes Neighboring gene nibrin Neighboring gene 2,4-dienoyl-CoA reductase 1 Neighboring gene transmembrane protein 64 Neighboring gene N-terminal EF-hand calcium binding protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058084.1 Chromosome 5 Reference ASM1485885v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of long-term synaptic potentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of presynaptic cytosolic calcium ion concentration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in dendrite IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in dendritic spine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in terminal bouton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calbindin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bufo gargarizans Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1485885v1 Primary Assembly

    Genomic

    1. NC_058084.1 Reference ASM1485885v1 Primary Assembly

      Range
      78476774..78547105 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044295705.1 → XP_044151640.1  calbindin

      Related
      ENSBGGP00000023702.1, ENSBGGT00000026113.1
      Conserved Domains (1) summary
      cd16176
      Location:16 → 258
      EFh_HEF_CB; EF-hand, calcium binding motif, found in calbindin (CB)
    Nucleotide Protein
    Heading Accession and Version

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