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    LOC106346799 40S ribosomal protein S12-1 [ Brassica napus (rape) ]

    Gene ID: 106346799, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC106346799
    Gene description
    40S ribosomal protein S12-1
    Locus tag
    HID58_021633
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica napus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC106346799 in Genome Data Viewer
    Location:
    chromosome: A6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current Da-Ae (GCF_020379485.1) A6 NC_063439.1 (6405844..6407141)
    101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A6 NC_027762.2 (8306733..8308027)

    Chromosome A6 - NC_063439.1Genomic Context describing neighboring genes Neighboring gene factor of DNA methylation 1-like Neighboring gene probable CCR4-associated factor 1 homolog 7 Neighboring gene sister chromatid cohesion protein PDS5 homolog E-like Neighboring gene cinnamoyl-CoA reductase 1-like Neighboring gene metal transporter Nramp6-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein S12-1
    Names
    BnaA06g10600D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Da-Ae Primary Assembly

    Genomic

    1. NC_063439.1 Reference Da-Ae Primary Assembly

      Range
      6405844..6407141
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013786233.2 → XP_013641687.1  40S ribosomal protein S12-1

      UniProtKB/TrEMBL
      A0A078H9F8, A0A817ARG3
      Conserved Domains (1) summary
      pfam01248
      Location:29 → 124
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

    2. XM_013786234.3 → XP_013641688.1  40S ribosomal protein S12-1

      UniProtKB/TrEMBL
      A0A078H9F8, A0A817ARG3
      Conserved Domains (1) summary
      pfam01248
      Location:29 → 124
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
    Nucleotide Protein
    Heading Accession and Version

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