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    SGMS1 sphingomyelin synthase 1 [ Dermochelys coriacea (leatherback sea turtle) ]

    Gene ID: 119858305, updated on 8-May-2024

    Summary

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    Gene symbol
    SGMS1
    Gene description
    sphingomyelin synthase 1
    See related
    EnsemblRapid:ENSDCOG00030013168
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Dermochelys coriacea
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Dermochelyidae; Dermochelys
    Orthologs
    human mouse all
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    Genomic context

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    See SGMS1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current rDerCor1.pri.v4 (GCF_009764565.3) 7 NC_050074.1 (90882834..91088522, complement)
    100 previous assembly rDerCor1.pri.v3 (GCF_009764565.2) 7 NC_050074.1 (90882836..91088304, complement)

    Chromosome 7 - NC_050074.1Genomic Context describing neighboring genes Neighboring gene APOBEC1 complementation factor Neighboring gene putative neutral ceramidase C Neighboring gene uncharacterized LOC122461226 Neighboring gene multiple inositol-polyphosphate phosphatase 1 Neighboring gene uncharacterized LOC122461085

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ceramide cholinephosphotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sphingomyelin synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ceramide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphingomyelin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylcholine:ceramide cholinephosphotransferase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Dermochelys coriacea Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rDerCor1.pri.v4

    Genomic

    1. NC_050074.1 Reference rDerCor1.pri.v4

      Range
      90882834..91088522 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043520042.1 → XP_043375977.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    2. XM_043520047.1 → XP_043375982.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    3. XM_043520041.1 → XP_043375976.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    4. XM_043520045.1 → XP_043375980.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    5. XM_043520046.1 → XP_043375981.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    6. XM_043520040.1 → XP_043375975.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    7. XM_043520037.1 → XP_043375972.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    8. XM_043520038.1 → XP_043375973.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    9. XM_043520033.1 → XP_043375968.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    10. XM_043520031.1 → XP_043375966.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    11. XM_043520034.1 → XP_043375969.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    12. XM_043520036.1 → XP_043375971.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    13. XM_038408557.2 → XP_038264485.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    14. XM_043520030.1 → XP_043375965.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    15. XM_043520043.1 → XP_043375978.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    16. XM_038408586.2 → XP_038264514.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Related
      ENSDCOP00030036796.1, ENSDCOT00030039014.1
      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    17. XM_038408582.2 → XP_038264510.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    18. XM_038408583.2 → XP_038264511.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    19. XM_038408584.2 → XP_038264512.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    20. XM_043520044.1 → XP_043375979.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    21. XM_043520032.1 → XP_043375967.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    22. XM_043520039.1 → XP_043375974.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal

    23. XM_043520035.1 → XP_043375970.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      Conserved Domains (2) summary
      cd09514
      Location:7 → 78
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:282 → 355
      PAP2_C; PAP2 superfamily C-terminal
    Nucleotide Protein
    Heading Accession and Version

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