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    AGGF1 angiogenic factor with G-patch and FHA domains 1 [ Dermochelys coriacea (leatherback sea turtle) ]

    Gene ID: 119855523, updated on 8-May-2024

    Summary

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    Gene symbol
    AGGF1
    Gene description
    angiogenic factor with G-patch and FHA domains 1
    See related
    EnsemblRapid:ENSDCOG00030007951
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Dermochelys coriacea
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Dermochelyidae; Dermochelys
    Orthologs
    human mouse all
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    Genomic context

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    See AGGF1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    101 current rDerCor1.pri.v4 (GCF_009764565.3) 5 NC_050072.1 (47398248..47435110, complement)
    100 previous assembly rDerCor1.pri.v3 (GCF_009764565.2) 5 NC_050072.1 (47397639..47435069, complement)

    Chromosome 5 - NC_050072.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119855644 Neighboring gene phosphodiesterase 8B Neighboring gene uncharacterized LOC119855524 Neighboring gene small nucleolar RNA SNORA47 Neighboring gene uncharacterized LOC122460118 Neighboring gene corticotropin releasing hormone binding protein Neighboring gene S100 calcium binding protein Z

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    angiogenic factor with G patch and FHA domains 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Dermochelys coriacea Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rDerCor1.pri.v4

    Genomic

    1. NC_050072.1 Reference rDerCor1.pri.v4

      Range
      47398248..47435110 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043514147.1 → XP_043370082.1  angiogenic factor with G patch and FHA domains 1 isoform X1

      Conserved Domains (3) summary
      cd00060
      Location:477 → 583
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd16164
      Location:186 → 239
      OCRE_VG5Q; OCRE domain found in angiogenic factor VG5Q and similar proteins
      cl02611
      Location:683 → 729
      G-patch; G-patch domain

    2. XM_043514148.1 → XP_043370083.1  angiogenic factor with G patch and FHA domains 1 isoform X2

      Conserved Domains (3) summary
      cd00060
      Location:449 → 555
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd16164
      Location:158 → 211
      OCRE_VG5Q; OCRE domain found in angiogenic factor VG5Q and similar proteins
      cl02611
      Location:655 → 701
      G-patch; G-patch domain

    3. XM_038401682.2 → XP_038257610.1  angiogenic factor with G patch and FHA domains 1 isoform X3

      Related
      ENSDCOP00030022618.1, ENSDCOT00030023820.1
      Conserved Domains (3) summary
      cd00060
      Location:404 → 510
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd16164
      Location:186 → 239
      OCRE_VG5Q; OCRE domain found in angiogenic factor VG5Q and similar proteins
      pfam01585
      Location:613 → 654
      G-patch; G-patch domain

    4. XM_038401688.2 → XP_038257616.1  angiogenic factor with G patch and FHA domains 1 isoform X5

      Conserved Domains (3) summary
      cd00060
      Location:308 → 414
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd16164
      Location:186 → 239
      OCRE_VG5Q; OCRE domain found in angiogenic factor VG5Q and similar proteins
      pfam01585
      Location:517 → 558
      G-patch; G-patch domain

    5. XM_043514149.1 → XP_043370084.1  angiogenic factor with G patch and FHA domains 1 isoform X4

      Conserved Domains (3) summary
      cd00060
      Location:320 → 426
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd16164
      Location:29 → 82
      OCRE_VG5Q; OCRE domain found in angiogenic factor VG5Q and similar proteins
      cl02611
      Location:526 → 572
      G-patch; G-patch domain
    Nucleotide Protein
    Heading Accession and Version

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