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    MARF1 meiosis regulator and mRNA stability factor 1 [ Chelonia mydas (Green sea turtle) ]

    Gene ID: 102936487, updated on 10-Mar-2024

    Summary

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    Gene symbol
    MARF1
    Gene description
    meiosis regulator and mRNA stability factor 1
    Locus tag
    UY3_05484
    See related
    EnsemblRapid:ENSCMYG00015014749
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chelonia mydas
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
    Also known as
    KIAA0430; Limkain-b1
    Orthologs
    human mouse all
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    Genomic context

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    See MARF1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    103 current rCheMyd1.pri.v2 (GCF_015237465.2) 10 NC_051250.2 (19763767..19799189)
    102 previous assembly rCheMyd1.pri (GCF_015237465.1) 10 NC_051250.1 (64255062..64290355, complement)

    Chromosome 10 - NC_051250.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119567230 Neighboring gene myosin heavy chain 11 Neighboring gene nudE neurodevelopment protein 1 Neighboring gene bMERB domain containing 1 Neighboring gene MPV17 mitochondrial inner membrane protein like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CCR4-NOT complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA base-pairing translational repressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    meiosis regulator and mRNA stability factor 1
    Names
    meiosis arrest female protein 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rCheMyd1.pri.v2 Primary Assembly

    Genomic

    1. NC_051250.2 Reference rCheMyd1.pri.v2 Primary Assembly

      Range
      19763767..19799189
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037910323.2 → XP_037766251.1  meiosis regulator and mRNA stability factor 1 isoform X2

      Related
      ENSCMYP00015022775.1, ENSCMYT00015027755.1
      Conserved Domains (11) summary
      cd09978
      Location:1004 → 1074
      LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
      cd09979
      Location:1100 → 1171
      LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
      cd09980
      Location:1176 → 1247
      LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
      cd09981
      Location:1260 → 1330
      LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
      cd09982
      Location:1336 → 1406
      LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
      cd09983
      Location:1412 → 1484
      LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
      cd09984
      Location:1487 → 1562
      LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
      cd10910
      Location:347 → 469
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
      cd12256
      Location:787 → 875
      RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins
      cl14879
      Location:876 → 937
      LabA_like_C; C-terminal domain of LabA_like proteins
      cl17169
      Location:505 → 590
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_043523459.1 → XP_043379394.1  meiosis regulator and mRNA stability factor 1 isoform X1

      Conserved Domains (11) summary
      cd09978
      Location:1034 → 1104
      LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
      cd09979
      Location:1130 → 1201
      LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
      cd09980
      Location:1206 → 1277
      LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
      cd09981
      Location:1290 → 1360
      LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
      cd09982
      Location:1366 → 1436
      LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
      cd09983
      Location:1442 → 1514
      LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
      cd09984
      Location:1517 → 1592
      LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
      smart00360
      Location:825 → 895
      RRM; RNA recognition motif
      COG0724
      Location:509 → 602
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd10910
      Location:347 → 469
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
      cl14879
      Location:906 → 967
      LabA_like_C; C-terminal domain of LabA_like proteins

    3. XM_007058143.4 → XP_007058205.2  meiosis regulator and mRNA stability factor 1 isoform X2

      Related
      ENSCMYP00015022770.1, ENSCMYT00015027750.1
      Conserved Domains (11) summary
      cd09978
      Location:1004 → 1074
      LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
      cd09979
      Location:1100 → 1171
      LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
      cd09980
      Location:1176 → 1247
      LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
      cd09981
      Location:1260 → 1330
      LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
      cd09982
      Location:1336 → 1406
      LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
      cd09983
      Location:1412 → 1484
      LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
      cd09984
      Location:1487 → 1562
      LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
      cd10910
      Location:347 → 469
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
      cd12256
      Location:787 → 875
      RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins
      cl14879
      Location:876 → 937
      LabA_like_C; C-terminal domain of LabA_like proteins
      cl17169
      Location:505 → 590
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_027820611.3 → XP_027676412.2  meiosis regulator and mRNA stability factor 1 isoform X3

      UniProtKB/TrEMBL
      M7BJJ1
      Conserved Domains (11) summary
      cd09977
      Location:703 → 764
      LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
      cd09978
      Location:831 → 901
      LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
      cd09979
      Location:927 → 998
      LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
      cd09980
      Location:1003 → 1074
      LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
      cd09981
      Location:1087 → 1157
      LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
      cd09982
      Location:1163 → 1233
      LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
      cd09983
      Location:1239 → 1311
      LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
      cd09984
      Location:1314 → 1389
      LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
      cd10910
      Location:174 → 296
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
      cd12256
      Location:614 → 702
      RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins
      cl17169
      Location:332 → 417
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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