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    LOC110628148 OBERON-like protein [ Manihot esculenta (cassava) ]

    Gene ID: 110628148, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC110628148
    Gene description
    OBERON-like protein
    Locus tag
    MANES_12G061500v8
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Manihot esculenta
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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    Genomic context

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    See LOC110628148 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current M.esculenta_v8 (GCF_001659605.2) 12 NC_035172.2 (6264181..6268150, complement)
    100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG12 NC_035172.1 (5574177..5578093)

    Chromosome 12 - NC_035172.2Genomic Context describing neighboring genes Neighboring gene glucan endo-1,3-beta-glucosidase 4 Neighboring gene histidine kinase 2 Neighboring gene heat shock protein 90-6, mitochondrial Neighboring gene uncharacterized LOC110627856

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    OBERON-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference M.esculenta_v8 Primary Assembly

    Genomic

    1. NC_035172.2 Reference M.esculenta_v8 Primary Assembly

      Range
      6264181..6268150 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021774665.2 → XP_021630357.1  OBERON-like protein

      UniProtKB/TrEMBL
      A0A2C9UU19
      Conserved Domains (2) summary
      pfam07227
      Location:212 → 336
      PHD_Oberon; PHD - plant homeodomain finger protein
      pfam16312
      Location:429 → 561
      Oberon_cc; Coiled-coil region of Oberon

    2. XM_021774664.2 → XP_021630356.1  OBERON-like protein

      UniProtKB/TrEMBL
      A0A2C9UU19
      Conserved Domains (2) summary
      pfam07227
      Location:212 → 336
      PHD_Oberon; PHD - plant homeodomain finger protein
      pfam16312
      Location:429 → 561
      Oberon_cc; Coiled-coil region of Oberon
    Nucleotide Protein
    Heading Accession and Version

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