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    LOC109081231 heterogeneous nuclear ribonucleoprotein K-like [ Cyprinus carpio (common carp) ]

    Gene ID: 109081231, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC109081231
    Gene description
    heterogeneous nuclear ribonucleoprotein K-like
    See related
    Ensembl:ENSCCRG00000029271
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cyprinus carpio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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    Genomic context

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    See LOC109081231 in Genome Data Viewer
    Location:
    chromosome: A8
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    101 current ASM1834038v1 (GCF_018340385.1) A8 NC_056579.1 (22441793..22448724)
    100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017542457.1 (7778..17765)

    Chromosome A8 - NC_056579.1Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 35, NatC auxiliary subunit-like Neighboring gene cytosolic carboxypeptidase 1-like Neighboring gene BDNF/NT-3 growth factors receptor-like Neighboring gene recQ-mediated genome instability protein 1-like Neighboring gene Q-nucleotide N-glycosylase 1 Neighboring gene G kinase anchoring protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein K-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1834038v1 Primary Assembly

    Genomic

    1. NC_056579.1 Reference ASM1834038v1 Primary Assembly

      Range
      22441793..22448724
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042762818.1 → XP_042618752.1  heterogeneous nuclear ribonucleoprotein K-like isoform X1

      UniProtKB/TrEMBL
      A0A9Q9YEJ1
      Conserved Domains (1) summary
      smart00322
      Location:140 → 209
      KH; K homology RNA-binding domain

    2. XM_042762817.1 → XP_042618751.1  heterogeneous nuclear ribonucleoprotein K-like isoform X1

      UniProtKB/TrEMBL
      A0A9Q9YEJ1
      Conserved Domains (1) summary
      smart00322
      Location:140 → 209
      KH; K homology RNA-binding domain

    3. XM_042762819.1 → XP_042618753.1  heterogeneous nuclear ribonucleoprotein K-like isoform X3

      UniProtKB/TrEMBL
      A0A8C1CZ11, A0A8C1T0F7, A0A8C2BXX7, A0A9R1SEA0
      Conserved Domains (1) summary
      smart00322
      Location:377 → 442
      KH; K homology RNA-binding domain

    4. XM_019096223.2 → XP_018951768.1  heterogeneous nuclear ribonucleoprotein K-like isoform X2

      UniProtKB/TrEMBL
      A0A9Q9V8Z8

    5. XM_019096227.2 → XP_018951772.1  heterogeneous nuclear ribonucleoprotein K-like isoform X4

      UniProtKB/TrEMBL
      A0A8C1CZ26, A0A8C1T0F7, A0A9Q9V907
      Related
      ENSCCRP00000054738.1

    6. XM_019096228.2 → XP_018951773.2  heterogeneous nuclear ribonucleoprotein K-like isoform X5

      UniProtKB/TrEMBL
      A0A9Q9V8Y1
      Conserved Domains (1) summary
      smart00322
      Location:21 → 90
      KH; K homology RNA-binding domain

    7. XM_042762820.1 → XP_042618754.1  heterogeneous nuclear ribonucleoprotein K-like isoform X6

      UniProtKB/TrEMBL
      A0A9Q9YEJ7
      Conserved Domains (1) summary
      cd22433
      Location:1 → 65
      KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    Nucleotide Protein
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