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    LOC122030487 transcription factor ICE1-like [ Zingiber officinale ]

    Gene ID: 122030487, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122030487
    Gene description
    transcription factor ICE1-like
    Locus tag
    ZIOFF_069334
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zingiber officinale
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Zingiberales; Zingiberaceae; Zingiber
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    Genomic context

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    See LOC122030487 in Genome Data Viewer
    Location:
    chromosome: 10B
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current Zo_v1.1 (GCF_018446385.1) 10B NC_056005.1 (14356760..14360177, complement)

    Chromosome 10B - NC_056005.1Genomic Context describing neighboring genes Neighboring gene mediator-associated protein 2-like Neighboring gene endoglucanase 12-like Neighboring gene chaperone protein ClpC1, chloroplastic-like Neighboring gene uncharacterized LOC122030059

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056005.1 Chromosome 10B Reference Zo_v1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor ICE1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zingiber officinale Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zo_v1.1 Primary Assembly

    Genomic

    1. NC_056005.1 Reference Zo_v1.1 Primary Assembly

      Range
      14356760..14360177 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042589706.1 → XP_042445640.1  transcription factor ICE1-like

      UniProtKB/TrEMBL
      A0A8J5CBN8
      Conserved Domains (2) summary
      cd11443
      Location:371 → 436
      bHLH_AtAMS_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein aborted microspores (AMS) and similar proteins
      cl09141
      Location:489 → 528
      ACT; ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme
    Nucleotide Protein
    Heading Accession and Version

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