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    nsmaf neutral sphingomyelinase (N-SMase) activation associated factor [ Callorhinchus milii (elephant shark) ]

    Gene ID: 103180712, updated on 11-Mar-2024

    Summary

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    Gene symbol
    nsmaf
    Gene description
    neutral sphingomyelinase (N-SMase) activation associated factor
    See related
    Ensembl:ENSCMIG00000018202
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callorhinchus milii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
    Orthologs
    human zebrafish all
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    Genomic context

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    See nsmaf in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704743.1 (107114457..107162946, complement)
    100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890101.1 (543250..589805, complement)

    NW_024704743.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 7A1 Neighboring gene syndecan binding protein Neighboring gene thymocyte selection-associated high mobility group box Neighboring gene carbonic anhydrase VIII

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FAN
    Names
    neutral sphingomyelinase activation associated factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IMCB_Cmil_1.0 Primary Assembly

    Genomic

    1. NW_024704743.1 Reference IMCB_Cmil_1.0 Primary Assembly

      Range
      107114457..107162946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042332626.1 → XP_042188560.1  protein FAN

      UniProtKB/TrEMBL
      A0A4W3JKZ8
      Conserved Domains (4) summary
      smart01026
      Location:295 → 568
      Beach; Beige/BEACH domain
      cd00200
      Location:625 → 911
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cd01201
      Location:185 → 278
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:631 → 668
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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