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    LOC103188301 zinc finger and BTB domain-containing protein 47 [ Callorhinchus milii (elephant shark) ]

    Gene ID: 103188301, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103188301
    Gene description
    zinc finger and BTB domain-containing protein 47
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callorhinchus milii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
    Also known as
    zbtb47
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    Genomic context

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    See LOC103188301 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704743.1 (1246101..1330450, complement)
    100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890260.1 (550865..581701, complement)

    NW_024704743.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103191187 Neighboring gene hedgehog acyltransferase like, a Neighboring gene kelch-like protein 40 Neighboring gene natural killer cell triggering receptor Neighboring gene transfer RNA threonine (anticodon CGU) Neighboring gene SEC22 homolog C, vesicle trafficking protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger and BTB domain-containing protein 47
    Names
    zinc finger and BTB domain containing 47
    zinc finger protein 652-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IMCB_Cmil_1.0 Primary Assembly

    Genomic

    1. NW_024704743.1 Reference IMCB_Cmil_1.0 Primary Assembly

      Range
      1246101..1330450 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042331828.1 → XP_042187762.1  zinc finger and BTB domain-containing protein 47 isoform X2

      Conserved Domains (5) summary
      PLN03086
      Location:365 → 439
      PLN03086; PRLI-interacting factor K; Provisional
      COG5048
      Location:573 → 653
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:515 → 598
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:521 → 541
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18231
      Location:1 → 115
      BTB_POZ_ZBTB47_ZNF651; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 47 (ZBTB47)

    2. XM_042331826.1 → XP_042187760.1  zinc finger and BTB domain-containing protein 47 isoform X1

      Conserved Domains (5) summary
      PLN03086
      Location:393 → 467
      PLN03086; PRLI-interacting factor K; Provisional
      COG5048
      Location:601 → 681
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:543 → 626
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:549 → 569
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18231
      Location:29 → 143
      BTB_POZ_ZBTB47_ZNF651; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 47 (ZBTB47)

    3. XM_042331827.1 → XP_042187761.1  zinc finger and BTB domain-containing protein 47 isoform X2

      Conserved Domains (5) summary
      PLN03086
      Location:365 → 439
      PLN03086; PRLI-interacting factor K; Provisional
      COG5048
      Location:573 → 653
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:515 → 598
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:521 → 541
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18231
      Location:1 → 115
      BTB_POZ_ZBTB47_ZNF651; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 47 (ZBTB47)
    Nucleotide Protein
    Heading Accession and Version

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