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    faf ubiquitin carboxyl-terminal hydrolase-like faf [ Drosophila eugracilis ]

    Gene ID: 108109364, updated on 23-May-2024

    Summary

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    Gene symbol
    faf
    Gene description
    ubiquitin carboxyl-terminal hydrolase-like faf
    See related
    EnsemblRapid:LOC108109364
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila eugracilis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Orthologs
    fruit fly all
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    Genomic context

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    See faf in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    102 current ASM1815383v1 (GCF_018153835.1) Unplaced Scaffold NW_024571878.1 (443020..456858)
    101 previous assembly Deug_2.0 (GCF_000236325.1) Unplaced Scaffold NW_016078031.1 (286882..300729, complement)

    NW_024571878.1Genomic Context describing neighboring genes Neighboring gene beta-glucuronidase Neighboring gene JNK1/MAPK8-associated membrane protein Neighboring gene septin interacting protein 3 Neighboring gene Methylcrotonoyl-CoA carboxylase 1 Neighboring gene ATP-dependent chromatin assembly factor large subunit Neighboring gene DDB1- and CUL4-associated factor 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ubiquitin carboxyl-terminal hydrolase FAF

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila eugracilis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1815383v1

    Genomic

    1. NW_024571878.1 Reference ASM1815383v1

      Range
      443020..456858
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017217833.2 → XP_017073322.2  probable ubiquitin carboxyl-terminal hydrolase FAF isoform X1

      Related
      XP_017073322.2, XM_017217833.2
      Conserved Domains (2) summary
      cd02659
      Location:1660 → 2057
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl28922
      Location:984 → 1054
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    2. XM_017217836.2 → XP_017073325.2  probable ubiquitin carboxyl-terminal hydrolase FAF isoform X2

      Related
      XP_017073325.2, XM_017217836.2
      Conserved Domains (2) summary
      cd02659
      Location:1660 → 2057
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl28922
      Location:984 → 1054
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    3. XM_017217834.2 → XP_017073323.2  probable ubiquitin carboxyl-terminal hydrolase FAF isoform X1

      Related
      XP_017073323.2, XM_017217834.2
      Conserved Domains (2) summary
      cd02659
      Location:1660 → 2057
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl28922
      Location:984 → 1054
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    4. XM_017217837.2 → XP_017073326.2  probable ubiquitin carboxyl-terminal hydrolase FAF isoform X3

      Related
      XP_017073326.2, XM_017217837.2
      Conserved Domains (2) summary
      cd02659
      Location:1660 → 2057
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl28922
      Location:984 → 1054
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    5. XM_017217838.2 → XP_017073327.2  probable ubiquitin carboxyl-terminal hydrolase FAF isoform X4

      Related
      XP_017073327.2, XM_017217838.2
      Conserved Domains (2) summary
      cd02659
      Location:1660 → 2057
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl28922
      Location:984 → 1054
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    6. XM_017217840.2 → XP_017073329.2  probable ubiquitin carboxyl-terminal hydrolase FAF isoform X5

      Related
      XP_017073329.2, XM_017217840.2
      Conserved Domains (2) summary
      cd02659
      Location:1660 → 2057
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl28922
      Location:984 → 1054
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    7. XM_017217835.2 → XP_017073324.2  probable ubiquitin carboxyl-terminal hydrolase FAF isoform X1

      Related
      XP_017073324.2, XM_017217835.2
      Conserved Domains (2) summary
      cd02659
      Location:1660 → 2057
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl28922
      Location:984 → 1054
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
    Nucleotide Protein
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