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    LOC121482858 sorting nexin-12 [ Vulpes lagopus (Arctic fox) ]

    Gene ID: 121482858, updated on 16-Nov-2023

    Summary

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    Gene symbol
    LOC121482858
    Gene description
    sorting nexin-12
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vulpes lagopus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
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    Genomic context

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    See LOC121482858 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current ASM1834538v1 (GCF_018345385.1) X NC_054848.1 (54827552..55011119, complement)

    Chromosome X - NC_054848.1Genomic Context describing neighboring genes Neighboring gene testis expressed 11 Neighboring gene ras-related protein Rab-32-like Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L39-like Neighboring gene U6 spliceosomal RNA Neighboring gene chromosome X CXorf65 homolog Neighboring gene forkhead box O4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_054848.1 Chromosome X Reference ASM1834538v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables amino acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-3-phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endocytic recycling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in late endosome to Golgi transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in early endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of retromer complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cationic amino acid transporter 3; sorting nexin-12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1834538v1 Primary Assembly

    Genomic

    1. NC_054848.1 Reference ASM1834538v1 Primary Assembly

      Range
      54827552..55011119 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041740849.1 → XP_041596783.1  cationic amino acid transporter 3 isoform X5

      Conserved Domains (2) summary
      cd07294
      Location:27 → 158
      PX_SNX12; The phosphoinositide binding Phox Homology domain of Sorting Nexin 12
      TIGR00906
      Location:190 → 505
      2A0303; cationic amino acid transport permease

    2. XM_041740846.1 → XP_041596780.1  cationic amino acid transporter 3 isoform X3

      Conserved Domains (1) summary
      TIGR00906
      Location:97 → 607
      2A0303; cationic amino acid transport permease

    3. XM_041740844.1 → XP_041596778.1  cationic amino acid transporter 3 isoform X2

      Conserved Domains (1) summary
      TIGR00906
      Location:97 → 661
      2A0303; cationic amino acid transport permease

    4. XM_041740843.1 → XP_041596777.1  cationic amino acid transporter 3 isoform X1

      Conserved Domains (1) summary
      TIGR00906
      Location:97 → 682
      2A0303; cationic amino acid transport permease

    5. XM_041740848.1 → XP_041596782.1  cationic amino acid transporter 3 isoform X4

      Conserved Domains (1) summary
      TIGR00906
      Location:4 → 589
      2A0303; cationic amino acid transport permease

    6. XM_041740847.1 → XP_041596781.1  cationic amino acid transporter 3 isoform X4

      Conserved Domains (1) summary
      TIGR00906
      Location:4 → 589
      2A0303; cationic amino acid transport permease

    7. XM_041740850.1 → XP_041596784.1  sorting nexin-12 isoform X6

      Conserved Domains (1) summary
      cd07294
      Location:27 → 158
      PX_SNX12; The phosphoinositide binding Phox Homology domain of Sorting Nexin 12

    8. XM_041740853.1 → XP_041596787.1  sorting nexin-12 isoform X9

      Conserved Domains (1) summary
      cd07294
      Location:27 → 158
      PX_SNX12; The phosphoinositide binding Phox Homology domain of Sorting Nexin 12

    9. XM_041740851.1 → XP_041596785.1  sorting nexin-12 isoform X7

      Conserved Domains (1) summary
      cd07294
      Location:27 → 158
      PX_SNX12; The phosphoinositide binding Phox Homology domain of Sorting Nexin 12

    10. XM_041740852.1 → XP_041596786.1  sorting nexin-12 isoform X8

      Conserved Domains (1) summary
      cd07294
      Location:27 → 158
      PX_SNX12; The phosphoinositide binding Phox Homology domain of Sorting Nexin 12

    RNA

    1. XR_005985647.1 RNA Sequence

    2. XR_005985646.1 RNA Sequence

    3. XR_005985645.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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