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    LOC122014005 putative germin-like protein 2-1 [ Zingiber officinale ]

    Gene ID: 122014005, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122014005
    Gene description
    putative germin-like protein 2-1
    Locus tag
    ZIOFF_004459
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zingiber officinale
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Zingiberales; Zingiberaceae; Zingiber
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    Genomic context

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    See LOC122014005 in Genome Data Viewer
    Location:
    chromosome: 1A
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current Zo_v1.1 (GCF_018446385.1) 1A NC_055987.1 (193827801..193828912, complement)

    Chromosome 1A - NC_055987.1Genomic Context describing neighboring genes Neighboring gene tubulin beta chain-like Neighboring gene putative germin-like protein 2-1 Neighboring gene putative germin-like protein 2-1 Neighboring gene uncharacterized LOC122009138

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_055987.1 Chromosome 1A Reference Zo_v1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell wall IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative germin-like protein 2-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zingiber officinale Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zo_v1.1 Primary Assembly

    Genomic

    1. NC_055987.1 Reference Zo_v1.1 Primary Assembly

      Range
      193827801..193828912 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042570205.1 → XP_042426139.1  putative germin-like protein 2-1

      Conserved Domains (1) summary
      cd02241
      Location:25 → 214
      cupin_OxOx; Oxalate oxidase (germin), cupin domain
    Nucleotide Protein
    Heading Accession and Version

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