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    ELOC elongin C [ Pyrgilauda ruficollis (rufous-necked snowfinch) ]

    Gene ID: 121351990, updated on 3-Aug-2024

    Summary

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    Gene symbol
    ELOC
    Gene description
    elongin C
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pyrgilauda ruficollis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Passeridae; Pyrgilauda
    Orthologs
    human mouse all
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    Genomic context

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    See ELOC in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current ASM1759013v1 (GCF_017590135.1) Unplaced Scaffold NW_024516984.1 (8310110..8321937)

    NW_024516984.1Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen 96 Neighboring gene transmembrane protein 70 Neighboring gene ubiquitin conjugating enzyme E2 W Neighboring gene staufen double-stranded RNA binding protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024516984 Unplaced Scaffold Reference ASM1759013v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-macromolecule adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of elongin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    elongin-C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pyrgilauda ruficollis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1759013v1 Primary Assembly

    Genomic

    1. NW_024516984.1 Reference ASM1759013v1 Primary Assembly

      Range
      8310110..8321937
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041464497.1 → XP_041320431.1  elongin-C isoform X2

      Conserved Domains (1) summary
      cl38908
      Location:82 → 113
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

    2. XM_041464495.1 → XP_041320429.1  elongin-C isoform X1

      Conserved Domains (1) summary
      cd18321
      Location:82 → 176
      BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

    3. XM_041464501.1 → XP_041320435.1  elongin-C isoform X4

      Conserved Domains (1) summary
      cd18321
      Location:18 → 112
      BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

    4. XM_041464500.1 → XP_041320434.1  elongin-C isoform X4

      Conserved Domains (1) summary
      cd18321
      Location:18 → 112
      BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

    5. XM_041464498.1 → XP_041320432.1  elongin-C isoform X3

      Conserved Domains (1) summary
      cd18321
      Location:46 → 140
      BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

    6. XM_041464499.1 → XP_041320433.1  elongin-C isoform X4

      Conserved Domains (1) summary
      cd18321
      Location:18 → 112
      BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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