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    LOC121271551 histone acetyltransferase p300-like [ Carcharodon carcharias (great white shark) ]

    Gene ID: 121271551, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC121271551
    Gene description
    histone acetyltransferase p300-like
    See related
    EnsemblRapid:ENSCHSG00020011923
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carcharodon carcharias
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Lamniformes; Alopiidae; Carcharodon
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    Genomic context

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    See LOC121271551 in Genome Data Viewer
    Location:
    chromosome: 31
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    100 current sCarCar2.pri (GCF_017639515.1) 31 NC_054497.1 (27520180..27635021, complement)

    Chromosome 31 - NC_054497.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene ring-box 1, E3 ubiquitin protein ligase Neighboring gene sperm protamine P1-like Neighboring gene L3MBTL histone methyl-lysine binding protein 2 Neighboring gene chondroadherin-like b Neighboring gene chondroadherin-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_054497.1 Chromosome 31 Reference sCarCar2.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone acetyltransferase p300-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carcharodon carcharias Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sCarCar2.pri Primary Assembly

    Genomic

    1. NC_054497.1 Reference sCarCar2.pri Primary Assembly

      Range
      27520180..27635021 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041177550.1 → XP_041033484.1  histone acetyltransferase p300-like isoform X2

      Related
      ENSCHSP00020020603.1, ENSCHST00020022771.1
      Conserved Domains (8) summary
      cd05495
      Location:1094 → 1201
      Bromo_cbp_like; Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to ...
      smart00551
      Location:1771 → 1849
      ZnF_TAZ; TAZ zinc finger, present in p300 and CBP
      PHA03247
      Location:619 → 1007
      PHA03247; large tegument protein UL36; Provisional
      cd02337
      Location:1712 → 1752
      ZZ_CBP; Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that ...
      cd15802
      Location:1213 → 1285
      RING_CBP-p300; atypical RING domain found in CREB-binding protein and p300 histone acetyltransferases
      pfam09606
      Location:2038 → 2448
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam02172
      Location:592 → 672
      KIX; KIX domain
      cl22851
      Location:1286 → 1320
      PHD_SF; PHD finger superfamily

    2. XM_041177549.1 → XP_041033483.1  histone acetyltransferase p300-like isoform X1

      Conserved Domains (8) summary
      cd05495
      Location:1094 → 1204
      Bromo_cbp_like; Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to ...
      smart00551
      Location:1774 → 1852
      ZnF_TAZ; TAZ zinc finger, present in p300 and CBP
      PHA03247
      Location:619 → 1007
      PHA03247; large tegument protein UL36; Provisional
      cd02337
      Location:1715 → 1755
      ZZ_CBP; Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that ...
      cd15802
      Location:1216 → 1288
      RING_CBP-p300; atypical RING domain found in CREB-binding protein and p300 histone acetyltransferases
      pfam09606
      Location:2041 → 2451
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam02172
      Location:592 → 672
      KIX; KIX domain
      cl22851
      Location:1289 → 1323
      PHD_SF; PHD finger superfamily

    3. XM_041177551.1 → XP_041033485.1  histone acetyltransferase p300-like isoform X3

      Conserved Domains (8) summary
      cd05495
      Location:833 → 943
      Bromo_cbp_like; Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to ...
      smart00551
      Location:1513 → 1591
      ZnF_TAZ; TAZ zinc finger, present in p300 and CBP
      PHA03247
      Location:358 → 746
      PHA03247; large tegument protein UL36; Provisional
      cd02337
      Location:1454 → 1494
      ZZ_CBP; Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that ...
      cd15802
      Location:955 → 1027
      RING_CBP-p300; atypical RING domain found in CREB-binding protein and p300 histone acetyltransferases
      pfam09606
      Location:1780 → 2190
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam02172
      Location:331 → 411
      KIX; KIX domain
      cl22851
      Location:1028 → 1062
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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