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    LOC121274341 aryl hydrocarbon receptor nuclear translocator-like [ Carcharodon carcharias (great white shark) ]

    Gene ID: 121274341, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC121274341
    Gene description
    aryl hydrocarbon receptor nuclear translocator-like
    See related
    EnsemblRapid:ENSCHSG00020018244
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carcharodon carcharias
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Lamniformes; Alopiidae; Carcharodon
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    Genomic context

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    See LOC121274341 in Genome Data Viewer
    Location:
    chromosome: 36
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    100 current sCarCar2.pri (GCF_017639515.1) 36 Unlocalized Scaffold NW_024470726.1 (3684676..3726083)

    NW_024470726.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase SETDB1-like Neighboring gene cortexin domain-containing 1-like Neighboring gene HORMA domain containing 1 Neighboring gene talin rod domain-containing protein 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024470726 Chromosome 36 Unlocalized Scaffold Reference sCarCar2.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of aryl hydrocarbon receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aryl hydrocarbon receptor nuclear translocator-like

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Carcharodon carcharias Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sCarCar2.pri Primary Assembly

    Genomic

    1. NW_024470726.1 Reference sCarCar2.pri Primary Assembly

      Range
      3684676..3726083
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041181596.1 → XP_041037530.1  aryl hydrocarbon receptor nuclear translocator-like isoform X1

      Conserved Domains (4) summary
      PLN03209
      Location:476 → 654
      PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
      smart00091
      Location:156 → 220
      PAS; PAS domain
      pfam08447
      Location:362 → 450
      PAS_3; PAS fold
      cd18947
      Location:76 → 140
      bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins

    2. XM_041181598.1 → XP_041037532.1  aryl hydrocarbon receptor nuclear translocator-like isoform X3

      Conserved Domains (4) summary
      PLN03209
      Location:454 → 632
      PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
      smart00091
      Location:156 → 220
      PAS; PAS domain
      pfam08447
      Location:340 → 428
      PAS_3; PAS fold
      cd18947
      Location:76 → 140
      bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins

    3. XM_041181597.1 → XP_041037531.1  aryl hydrocarbon receptor nuclear translocator-like isoform X2

      Related
      ENSCHSP00020031843.1, ENSCHST00020035299.1
      Conserved Domains (3) summary
      smart00091
      Location:156 → 220
      PAS; PAS domain
      pfam08447
      Location:362 → 450
      PAS_3; PAS fold
      cd18947
      Location:76 → 140
      bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
    Nucleotide Protein
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