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    LOC100812265 homocysteine S-methyltransferase 1 [ Glycine max (soybean) ]

    Gene ID: 100812265, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100812265
    Gene description
    homocysteine S-methyltransferase 1
    Locus tag
    GLYMA_08G261200v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100812265 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (25181237..25186584, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (25081456..25086839, complement)

    Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113002324 Neighboring gene 3-ketoacyl-CoA synthase 6 Neighboring gene uncharacterized LOC102669766 Neighboring gene troponin I 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-adenosylmethionine-homocysteine S-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in S-methylmethionine cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in methionine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homocysteine S-methyltransferase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      25181237..25186584 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003531879.4 → XP_003531927.1  homocysteine S-methyltransferase 1 isoform X1

      See identical proteins and their annotated locations for XP_003531927.1

      UniProtKB/TrEMBL
      A0A0R0IY33, I1KWU9
      Conserved Domains (1) summary
      PLN02489
      Location:5 → 323
      PLN02489; homocysteine S-methyltransferase

    2. XM_041017815.1 → XP_040873749.1  homocysteine S-methyltransferase 1 isoform X2

      UniProtKB/TrEMBL
      A0A0R0IY33, I1KWV0
      Conserved Domains (1) summary
      PLN02489
      Location:8 → 278
      PLN02489; homocysteine S-methyltransferase
    Nucleotide Protein
    Heading Accession and Version

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