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    Trmt1 tRNA methyltransferase 1 [ Mesocricetus auratus (golden hamster) ]

    Gene ID: 101832603, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Trmt1
    Gene description
    tRNA methyltransferase 1
    See related
    EnsemblRapid:ENSMAUG00000011134
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mesocricetus auratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
    Orthologs
    human mouse all
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    Genomic context

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    See Trmt1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429237.1 (1478322..1490024)
    102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801866.1 (464751..477434)

    NW_024429237.1Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel subunit alpha1 A Neighboring gene uncharacterized LOC121136400 Neighboring gene immediate early response 2 Neighboring gene nucleus accumbens associated 1 Neighboring gene LYL1 basic helix-loop-helix family member Neighboring gene nuclear factor I X

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA N2-guanine methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA (guanine(26)-N(2))-dimethyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BCM_Maur_2.0 Primary Assembly

    Genomic

    1. NW_024429237.1 Reference BCM_Maur_2.0 Primary Assembly

      Range
      1478322..1490024
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013126164.3 → XP_012981618.1  tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1

      See identical proteins and their annotated locations for XP_012981618.1

      UniProtKB/TrEMBL
      A0A1U8D1Y3
      Related
      ENSMAUP00000010195.2, ENSMAUT00000014063.2
      Conserved Domains (3) summary
      smart00356
      Location:598 → 624
      ZnF_C3H1; zinc finger
      pfam02005
      Location:52 → 498
      TRM; N2,N2-dimethylguanosine tRNA methyltransferase
      cl25637
      Location:569 → 622
      DFRP_C; DRG Family Regulatory Proteins, Tma46

    2. XM_013126166.3 → XP_012981620.1  tRNA (guanine(26)-N(2))-dimethyltransferase isoform X2

      See identical proteins and their annotated locations for XP_012981620.1

      UniProtKB/TrEMBL
      A0A1U8CT30
      Conserved Domains (3) summary
      smart00356
      Location:573 → 599
      ZnF_C3H1; zinc finger
      COG5252
      Location:544 → 597
      COG5252; Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
      pfam02005
      Location:27 → 473
      TRM; N2,N2-dimethylguanosine tRNA methyltransferase

    3. XM_040736790.1 → XP_040592724.1  tRNA (guanine(26)-N(2))-dimethyltransferase isoform X2

      UniProtKB/TrEMBL
      A0A1U8CT30
      Conserved Domains (3) summary
      smart00356
      Location:573 → 599
      ZnF_C3H1; zinc finger
      COG5252
      Location:544 → 597
      COG5252; Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
      pfam02005
      Location:27 → 473
      TRM; N2,N2-dimethylguanosine tRNA methyltransferase

    4. XM_021223726.2 → XP_021079385.1  tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1

      UniProtKB/TrEMBL
      A0A1U8D1Y3
      Conserved Domains (3) summary
      smart00356
      Location:598 → 624
      ZnF_C3H1; zinc finger
      pfam02005
      Location:52 → 498
      TRM; N2,N2-dimethylguanosine tRNA methyltransferase
      cl25637
      Location:569 → 622
      DFRP_C; DRG Family Regulatory Proteins, Tma46

    5. XM_005087306.4 → XP_005087363.1  tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1

      See identical proteins and their annotated locations for XP_005087363.1

      UniProtKB/TrEMBL
      A0A1U8D1Y3
      Related
      ENSMAUP00000010203.2, ENSMAUT00000014071.2
      Conserved Domains (3) summary
      smart00356
      Location:598 → 624
      ZnF_C3H1; zinc finger
      pfam02005
      Location:52 → 498
      TRM; N2,N2-dimethylguanosine tRNA methyltransferase
      cl25637
      Location:569 → 622
      DFRP_C; DRG Family Regulatory Proteins, Tma46

    6. XM_013126167.3 → XP_012981621.1  tRNA (guanine(26)-N(2))-dimethyltransferase isoform X2

      See identical proteins and their annotated locations for XP_012981621.1

      UniProtKB/TrEMBL
      A0A1U8CT30
      Conserved Domains (3) summary
      smart00356
      Location:573 → 599
      ZnF_C3H1; zinc finger
      COG5252
      Location:544 → 597
      COG5252; Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
      pfam02005
      Location:27 → 473
      TRM; N2,N2-dimethylguanosine tRNA methyltransferase

    7. XM_040736791.1 → XP_040592725.1  tRNA (guanine(26)-N(2))-dimethyltransferase isoform X3

      Conserved Domains (3) summary
      smart00356
      Location:362 → 388
      ZnF_C3H1; zinc finger
      COG5252
      Location:333 → 386
      COG5252; Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
      cl17173
      Location:15 → 267
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    RNA

    1. XR_005873487.1 RNA Sequence

      Related
      ENSMAUT00000079327.1
    Nucleotide Protein
    Heading Accession and Version

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