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    Yju2b YJU2 splicing factor homolog B [ Mesocricetus auratus (golden hamster) ]

    Gene ID: 101843564, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Yju2b
    Gene description
    YJU2 splicing factor homolog B
    See related
    EnsemblRapid:ENSMAUG00000020315
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mesocricetus auratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
    Also known as
    Ccdc130
    Orthologs
    human mouse all
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    Genomic context

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    See Yju2b in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429237.1 (289336..303705)
    102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801882.1 (683506..693878, complement)

    NW_024429237.1Genomic Context describing neighboring genes Neighboring gene tubulin alpha chain-like Neighboring gene plasma membrane calcium-transporting ATPase 4-like Neighboring gene chromosome unknown C19orf53 homolog Neighboring gene methylthioribose-1-phosphate isomerase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of post-mRNA release spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 130
    Names
    coiled-coil domain containing 130

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BCM_Maur_2.0 Primary Assembly

    Genomic

    1. NW_024429237.1 Reference BCM_Maur_2.0 Primary Assembly

      Range
      289336..303705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040736782.1 → XP_040592716.1  coiled-coil domain-containing protein 130

      UniProtKB/TrEMBL
      A0A1U8CQH4
      Related
      ENSMAUP00000026310.1, ENSMAUT00000075775.1
      Conserved Domains (1) summary
      pfam04502
      Location:9 → 379
      DUF572; Family of unknown function (DUF572)
    Nucleotide Protein
    Heading Accession and Version

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