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    KDM5A lysine demethylase 5A [ Falco naumanni (lesser kestrel) ]

    Gene ID: 121089445, updated on 3-Aug-2024

    Summary

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    Gene symbol
    KDM5A
    Gene description
    lysine demethylase 5A
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Falco naumanni
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Falconiformes; Falconidae; Falco
    Orthologs
    human mouse all
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    Genomic context

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    See KDM5A in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    100 current bFalNau1.pat (GCF_017639655.1) 5 NC_054058.1 (24820495..24870572)

    Chromosome 5 - NC_054058.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-N-acetyl-galactosaminyltransferase 3 Neighboring gene uncharacterized LOC121088940 Neighboring gene coiled-coil domain containing 77 Neighboring gene uncharacterized LOC121089447 Neighboring gene solute carrier family 6 member 13 Neighboring gene solute carrier family 6 member 12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_054058.1 Chromosome 5 Reference bFalNau1.pat Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase 5A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Falco naumanni Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bFalNau1.pat Primary Assembly

    Genomic

    1. NC_054058.1 Reference bFalNau1.pat Primary Assembly

      Range
      24820495..24870572
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040596670.1 → XP_040452604.1  lysine-specific demethylase 5A isoform X2

      Conserved Domains (5) summary
      smart00545
      Location:18 → 59
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00558
      Location:442 → 499
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd15602
      Location:294 → 342
      PHD1_KDM5A; PHD finger 1 found in Lysine-specific demethylase 5A (KDM5A)
      cd15606
      Location:1163 → 1215
      PHD2_KDM5A; PHD finger 2 found in Lysine-specific demethylase 5A (KDM5A)
      cd16873
      Location:84 → 175
      ARID_KDM5A; ARID/BRIGHT DNA binding domain of lysine-specific demethylase 5A (KDM5A)

    2. XM_040596668.1 → XP_040452602.1  lysine-specific demethylase 5A isoform X1

      Conserved Domains (6) summary
      smart00545
      Location:18 → 59
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00558
      Location:442 → 499
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd15602
      Location:294 → 342
      PHD1_KDM5A; PHD finger 1 found in Lysine-specific demethylase 5A (KDM5A)
      cd15606
      Location:1163 → 1215
      PHD2_KDM5A; PHD finger 2 found in Lysine-specific demethylase 5A (KDM5A)
      cd15686
      Location:1608 → 1659
      PHD3_KDM5A; PHD finger 3 found in Lysine-specific demethylase 5A (KDM5A)
      cd16873
      Location:84 → 175
      ARID_KDM5A; ARID/BRIGHT DNA binding domain of lysine-specific demethylase 5A (KDM5A)
    Nucleotide Protein
    Heading Accession and Version

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