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    LOC112176622 DNA annealing helicase and endonuclease ZRANB3 [ Rosa chinensis ]

    Gene ID: 112176622, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC112176622
    Gene description
    DNA annealing helicase and endonuclease ZRANB3
    Locus tag
    RchiOBHm_Chr7g0182391
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rosa chinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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    Genomic context

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    See LOC112176622 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    101 current RchiOBHm-V2 (GCF_002994745.2) 7 NC_037094.1 (3640927..3659810)

    Chromosome 7 - NC_037094.1Genomic Context describing neighboring genes Neighboring gene transcription factor PIF7 Neighboring gene remorin 4.2 Neighboring gene uncharacterized LOC112176073 Neighboring gene uncharacterized LOC112180769

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037094.1 Chromosome 7 Reference RchiOBHm-V2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in replication fork processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear replication fork IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA annealing helicase and endonuclease ZRANB3
    Names
    putative DNA helicase chromatin remodeling SNF2 family
    putative valine--tRNA ligase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rosa chinensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference RchiOBHm-V2

    Genomic

    1. NC_037094.1 Reference RchiOBHm-V2

      Range
      3640927..3659810
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024314650.2 → XP_024170418.1  DNA annealing helicase and endonuclease ZRANB3 isoform X8

      Conserved Domains (2) summary
      COG0553
      Location:65 → 545
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00085
      Location:1009 → 1049
      HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...

    2. XM_024314649.2 → XP_024170417.1  DNA annealing helicase and endonuclease ZRANB3 isoform X4

      Conserved Domains (2) summary
      COG0553
      Location:183 → 663
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00085
      Location:1127 → 1167
      HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...

    3. XM_040512261.1 → XP_040368195.1  DNA annealing helicase and endonuclease ZRANB3 isoform X6

      Conserved Domains (3) summary
      COG0553
      Location:183 → 663
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00085
      Location:1115 → 1155
      HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...
      cd18010
      Location:206 → 430
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

    4. XM_024314646.2 → XP_024170414.1  DNA annealing helicase and endonuclease ZRANB3 isoform X1

      UniProtKB/TrEMBL
      A0A2P6P2W7
      Conserved Domains (2) summary
      COG0553
      Location:183 → 663
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00085
      Location:1127 → 1167
      HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...

    5. XM_040512260.1 → XP_040368194.1  DNA annealing helicase and endonuclease ZRANB3 isoform X5

      Conserved Domains (3) summary
      COG0553
      Location:183 → 663
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00085
      Location:1116 → 1156
      HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...
      cd18010
      Location:206 → 430
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

    6. XM_024314647.2 → XP_024170415.1  DNA annealing helicase and endonuclease ZRANB3 isoform X2

      Conserved Domains (2) summary
      COG0553
      Location:183 → 663
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00085
      Location:1126 → 1166
      HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...

    7. XM_024314648.2 → XP_024170416.1  DNA annealing helicase and endonuclease ZRANB3 isoform X3

      Conserved Domains (2) summary
      COG0553
      Location:183 → 663
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00085
      Location:1125 → 1165
      HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...

    8. XM_040512262.1 → XP_040368196.1  DNA annealing helicase and endonuclease ZRANB3 isoform X7

      Conserved Domains (3) summary
      COG0553
      Location:183 → 663
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00085
      Location:1114 → 1154
      HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...
      cd18010
      Location:206 → 430
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

    9. XM_040512263.1 → XP_040368197.1  DNA annealing helicase and endonuclease ZRANB3 isoform X9

      Conserved Domains (2) summary
      COG0553
      Location:183 → 663
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18010
      Location:206 → 430
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1
    Nucleotide Protein
    Heading Accession and Version

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