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    LBD10 LOB domain-containing protein 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816897, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LBD10
    Official Full Name
    LOB domain-containing protein 10
    Primary source
    TAIR:AT2G23660
    Locus tag
    AT2G23660
    See related
    Araport:AT2G23660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F26B6.31; F26B6_31; LOB domain-containing protein 10
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    Genomic context

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    See LBD10 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (10060065..10061822, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Reticulan like protein B13 Neighboring gene tRNA-Met Neighboring gene ncRNA Neighboring gene homolog of Synechocystis YCF37 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LATERAL ORGAN BOUNDARIES DOMAIN (LBD)10 interacts with SIDECAR POLLEN/LBD27 to control pollen development in Arabidopsis. Kim MJ, et al. Plant J, 2015 Mar. PMID 25611322
    2. ZmMS1/ZmLBD30-orchestrated transcriptional regulatory networks precisely control pollen exine development. Hou Q, et al. Mol Plant, 2023 Aug 7. PMID 37501369
    3. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A combinatorial role of LBD10 with LBD27 is crucial for male gametophyte development in Arabidopsis. LBD10 and LBD27 interact to form a heterodimer for nuclear localization.
      Title: LATERAL ORGAN BOUNDARIES DOMAIN (LBD)10 interacts with SIDECAR POLLEN/LBD27 to control pollen development in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001161058.2
    NM_001335860.1
    NM_127929.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LOB domain-containing protein 10
    NP_001154530.1
    • LOB domain-containing protein 10 (LBD10); INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: ASYMMETRIC LEAVES 2-like 1 (TAIR:AT5G66870.1); Has 1085 Blast hits to 1079 proteins in 38 species: Archae - 0; Bacteria - 8; Metazoa - 18; Fungi - 1; Plants - 1055; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_179946.1
    • LOB domain-containing protein 10 (LBD10); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: ASYMMETRIC LEAVES 2-like 1 (TAIR:AT5G66870.1); Has 1085 Blast hits to 1079 proteins in 38 species: Archae - 0; Bacteria - 8; Metazoa - 18; Fungi - 1; Plants - 1055; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10060065..10061822 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127929.3 → NP_179946.1  LOB domain-containing protein 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179946.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG56, O64836
      UniProtKB/TrEMBL
      A0A654EVH6
      Conserved Domains (1) summary
      pfam03195
      Location:6 → 103
      DUF260; Protein of unknown function DUF260

    2. NM_001161058.2 → NP_001154530.1  LOB domain-containing protein 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154530.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG56, O64836
      UniProtKB/TrEMBL
      A0A654EVH6
      Conserved Domains (1) summary
      pfam03195
      Location:6 → 103
      DUF260; Protein of unknown function DUF260

    3. NM_001335860.1 → NP_001323843.1  LOB domain-containing protein 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG56, O64836
      UniProtKB/TrEMBL
      A0A654EVH6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64836.1

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