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    AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 [ Bufo bufo (common toad) ]

    Gene ID: 121008955, updated on 22-Mar-2024

    Summary

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    Gene symbol
    AGAP1
    Gene description
    ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
    See related
    EnsemblRapid:ENSBBFG00005022246
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bufo bufo
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo
    Orthologs
    human mouse all
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    Genomic context

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    See AGAP1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current aBufBuf1.1 (GCF_905171765.1) 7 NC_053395.1 (169072907..169478876, complement)

    Chromosome 7 - NC_053395.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SOCS box containing 18 Neighboring gene gastrulation brain homeobox 2 Neighboring gene SRSF protein kinase 1-like Neighboring gene TruB pseudouridine synthase family member 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053395.1 Chromosome 7 Reference aBufBuf1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bufo bufo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aBufBuf1.1

    Genomic

    1. NC_053395.1 Reference aBufBuf1.1

      Range
      169072907..169478876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040441790.1 → XP_040297724.1  arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X2

      Related
      ENSBBFP00005030131.1, ENSBBFT00005033854.1
      Conserved Domains (5) summary
      cd04103
      Location:72 → 229
      Centaurin_gamma; Centaurin gamma (CENTG) GTPase
      PTZ00322
      Location:735 → 840
      PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
      cd01250
      Location:344 → 595
      PH_AGAP; Arf-GAP with GTPase, ANK repeat and PH domain-containing protein Pleckstrin homology (PH) domain
      sd00045
      Location:771 → 802
      ANK; ANK repeat [structural motif]
      cd08836
      Location:614 → 720
      ArfGap_AGAP; ArfGAP with GTPase domain, ANK repeat and PH domains

    2. XM_040441789.1 → XP_040297723.1  arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X1

      Related
      ENSBBFP00005030141.1, ENSBBFT00005033867.1
      Conserved Domains (5) summary
      cd04103
      Location:363 → 520
      Centaurin_gamma; Centaurin gamma (CENTG) GTPase
      COG0666
      Location:1044 → 1119
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd01250
      Location:635 → 886
      PH_AGAP; Arf-GAP with GTPase, ANK repeat and PH domain-containing protein Pleckstrin homology (PH) domain
      sd00045
      Location:1062 → 1093
      ANK; ANK repeat [structural motif]
      cd08836
      Location:905 → 1011
      ArfGap_AGAP; ArfGAP with GTPase domain, ANK repeat and PH domains
    Nucleotide Protein
    Heading Accession and Version

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