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    PLS1 plastin 1 [ Oryx dammah (scimitar-horned oryx) ]

    Gene ID: 120858231, updated on 21-Mar-2024

    Summary

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    Gene symbol
    PLS1
    Gene description
    plastin 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryx dammah
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Hippotraginae; Oryx
    Orthologs
    human mouse all
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    Genomic context

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    See PLS1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current SCBI_Odam_1.1 (GCF_014754425.2) Unplaced Scaffold NW_024070186.1 (30882694..31010614)

    NW_024070186.1Genomic Context describing neighboring genes Neighboring gene glycerol kinase 5 Neighboring gene 5'-3' exoribonuclease 1 Neighboring gene ATR serine/threonine kinase Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene transient receptor potential cation channel subfamily C member 1 Neighboring gene procollagen C-endopeptidase enhancer 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024070186 Unplaced Scaffold Reference SCBI_Odam_1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in actin filament network formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in actin filament bundle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plastin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryx dammah Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SCBI_Odam_1.1 Primary Assembly

    Genomic

    1. NW_024070186.1 Reference SCBI_Odam_1.1 Primary Assembly

      Range
      30882694..31010614
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040234168.1 → XP_040090102.1  plastin-1

      Conserved Domains (1) summary
      COG5069
      Location:13 → 622
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    Nucleotide Protein
    Heading Accession and Version

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