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    LOC112421013 protein ALP1-like [ Medicago truncatula (barrel medic) ]

    Gene ID: 112421013, updated on 7-Apr-2023

    Summary

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    Gene symbol
    LOC112421013
    Gene description
    protein ALP1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC112421013 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (5744073..5747744, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (5461558..5465294, complement)

    Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC11422751 Neighboring gene uncharacterized LOC120580041 Neighboring gene receptor-like protein 35 Neighboring gene uncharacterized LOC11422483 Neighboring gene uncharacterized LOC11418185

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein ALP1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      5744073..5747744 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024780919.2 → XP_024636687.1  protein ALP1-like isoform X1

      Conserved Domains (1) summary
      pfam13359
      Location:181 → 342
      DDE_Tnp_4; DDE superfamily endonuclease

    2. XM_039833962.1 → XP_039689896.1  protein ALP1-like isoform X2

      Conserved Domains (1) summary
      cl21562
      Location:200 → 318
      DDE_Tnp_4; DDE superfamily endonuclease

    3. XM_039833961.1 → XP_039689895.1  protein ALP1-like isoform X1

      Conserved Domains (1) summary
      pfam13359
      Location:181 → 342
      DDE_Tnp_4; DDE superfamily endonuclease
    Nucleotide Protein
    Heading Accession and Version

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