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    sash1a SAM and SH3 domain containing 1a [ Polypterus senegalus (gray bichir) ]

    Gene ID: 120525340, updated on 12-Sep-2024

    Summary

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    Gene symbol
    sash1a
    Gene description
    SAM and SH3 domain containing 1a
    Locus tag
    GTO96_0014761
    See related
    EnsemblRapid:ENSSTSG00000012544
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Polypterus senegalus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
    Also known as
    Samd5; Sash1_0; Sash1_1; Sash1_2
    Orthologs
    zebrafish all
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    Genomic context

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    See sash1a in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    100 current ASM1683550v1 (GCF_016835505.1) 3 NC_053156.1 (85606901..86526827)

    Chromosome 3 - NC_053156.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120525336 Neighboring gene syntaxin-binding protein 5 Neighboring gene uncharacterized LOC120525341 Neighboring gene uronyl 2-sulfotransferase a Neighboring gene uncharacterized LOC120525343 Neighboring gene uncharacterized LOC120526943

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053156.1 Chromosome 3 Reference ASM1683550v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SAM and SH3 domain-containing protein 1a
    Names
    SASH1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1683550v1 Primary Assembly

    Genomic

    1. NC_053156.1 Reference ASM1683550v1 Primary Assembly

      Range
      85606901..86526827
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039747549.1 → XP_039603483.1  SAM and SH3 domain-containing protein 1a isoform X1

      Conserved Domains (3) summary
      cd09527
      Location:3 → 64
      SAM_Samd5; SAM domain of Samd5 subfamily
      cd11967
      Location:849 → 905
      SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
      cl15755
      Location:925 → 990
      SAM_superfamily; SAM (Sterile alpha motif )

    2. XM_039747550.1 → XP_039603484.1  SAM and SH3 domain-containing protein 1a isoform X2

      Conserved Domains (3) summary
      cd09527
      Location:3 → 64
      SAM_Samd5; SAM domain of Samd5 subfamily
      cd11967
      Location:848 → 904
      SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
      cl15755
      Location:924 → 989
      SAM_superfamily; SAM (Sterile alpha motif )

    3. XM_039747556.1 → XP_039603490.1  SAM and SH3 domain-containing protein 1a isoform X7

      Conserved Domains (3) summary
      cd09527
      Location:3 → 64
      SAM_Samd5; SAM domain of Samd5 subfamily
      cd11967
      Location:677 → 733
      SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
      cl15755
      Location:753 → 818
      SAM_superfamily; SAM (Sterile alpha motif )

    4. XM_039747557.1 → XP_039603491.1  SAM and SH3 domain-containing protein 1a isoform X8

      Related
      ENSSTSP00000027682.1, ENSSTST00000031533.1
      Conserved Domains (3) summary
      cd09527
      Location:3 → 64
      SAM_Samd5; SAM domain of Samd5 subfamily
      cd11967
      Location:676 → 732
      SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
      cl15755
      Location:752 → 817
      SAM_superfamily; SAM (Sterile alpha motif )

    5. XM_039747558.1 → XP_039603492.1  SAM and SH3 domain-containing protein 1a isoform X9

      Conserved Domains (2) summary
      cd11967
      Location:663 → 719
      SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
      cl15755
      Location:739 → 804
      SAM_superfamily; SAM (Sterile alpha motif )

    6. XM_039747555.1 → XP_039603489.1  SAM and SH3 domain-containing protein 1a isoform X6

      Related
      ENSSTSP00000027631.1, ENSSTST00000031482.1
      Conserved Domains (2) summary
      cd11967
      Location:692 → 748
      SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
      cl15755
      Location:768 → 833
      SAM_superfamily; SAM (Sterile alpha motif )

    7. XM_039747554.1 → XP_039603488.1  SAM and SH3 domain-containing protein 1a isoform X5

      Related
      ENSSTSP00000027737.1, ENSSTST00000031588.1
      Conserved Domains (2) summary
      cd11967
      Location:692 → 748
      SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
      cl15755
      Location:768 → 833
      SAM_superfamily; SAM (Sterile alpha motif )

    8. XM_039747551.1 → XP_039603485.1  SAM and SH3 domain-containing protein 1a isoform X3

      Related
      ENSSTSP00000027727.1, ENSSTST00000031578.1
      Conserved Domains (2) summary
      cd11967
      Location:724 → 780
      SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
      cl15755
      Location:800 → 865
      SAM_superfamily; SAM (Sterile alpha motif )

    9. XM_039747552.1 → XP_039603486.1  SAM and SH3 domain-containing protein 1a isoform X4

      Related
      ENSSTSP00000027699.1, ENSSTST00000031550.1
      Conserved Domains (2) summary
      cd11967
      Location:705 → 761
      SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
      cl15755
      Location:781 → 846
      SAM_superfamily; SAM (Sterile alpha motif )
    Nucleotide Protein
    Heading Accession and Version

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