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    jade2 jade family PHD finger 2 [ Oreochromis aureus ]

    Gene ID: 116315841, updated on 18-Jun-2024

    Summary

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    Gene symbol
    jade2
    Gene description
    jade family PHD finger 2
    See related
    Ensembl:ENSOABG00000017419
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis aureus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Orthologs
    human zebrafish all
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    Genomic context

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    See jade2 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    14
    Annotation release Status Assembly LG Location
    101 current ZZ_aureus (GCF_013358895.1) 10 NC_052951.1 (24596576..24819167)
    100 previous assembly ASM587006v1 (GCF_005870065.1) Unplaced Scaffold NW_022245379.1 (1159572..1336288)

    Linkage Group 10 - NC_052951.1Genomic Context describing neighboring genes Neighboring gene CDKN2A interacting protein N-terminal like Neighboring gene ubiquitin-conjugating enzyme E2B (RAD6 homolog) Neighboring gene secretion associated, Ras related GTPase 1B Neighboring gene SEC24 homolog A, COPII coat complex component

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Jade-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oreochromis aureus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ZZ_aureus Primary Assembly

    Genomic

    1. NC_052951.1 Reference ZZ_aureus Primary Assembly

      Range
      24596576..24819167
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039617918.1 → XP_039473852.1  protein Jade-1 isoform X1

      UniProtKB/TrEMBL
      A0A668UE22
      Related
      ENSOABP00000038138.2, ENSOABT00000039183.2
      Conserved Domains (2) summary
      COG5141
      Location:134 → 589
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15705
      Location:251 → 361
      ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

    2. XM_039617919.1 → XP_039473853.1  protein Jade-1 isoform X2

      UniProtKB/TrEMBL
      A0A668UE22
      Conserved Domains (2) summary
      COG5141
      Location:134 → 577
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15705
      Location:251 → 361
      ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

    3. XM_039617920.1 → XP_039473854.1  protein Jade-1 isoform X3

      UniProtKB/TrEMBL
      A0A668UE22
      Related
      ENSOABP00000038135.2, ENSOABT00000039180.2
      Conserved Domains (2) summary
      COG5141
      Location:134 → 588
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15705
      Location:251 → 361
      ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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