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    DDX54 DEAD-box helicase 54 [ Mauremys reevesii (Reeves's turtle) ]

    Gene ID: 120386197, updated on 21-Mar-2024

    Summary

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    Gene symbol
    DDX54
    Gene description
    DEAD-box helicase 54
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mauremys reevesii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
    Orthologs
    human mouse all
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    Genomic context

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    See DDX54 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    21
    Annotation release Status Assembly LG Location
    100 current ASM1616193v1 (GCF_016161935.1) 18 NC_052640.1 (29463082..29479810)

    Linkage Group 18 - NC_052640.1Genomic Context describing neighboring genes Neighboring gene fish-egg lectin-like Neighboring gene uncharacterized LOC120386362 Neighboring gene uncharacterized LOC120386199 Neighboring gene cilia and flagella associated protein 73 Neighboring gene RAS protein activator like 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052640.1 Chromosome 18 Reference ASM1616193v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase DDX54

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1616193v1 Primary Assembly

    Genomic

    1. NC_052640.1 Reference ASM1616193v1 Primary Assembly

      Range
      29463082..29479810
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039505221.1 → XP_039361155.1  ATP-dependent RNA helicase DDX54 isoform X4

      Conserved Domains (4) summary
      COG0513
      Location:50 → 516
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      cd17959
      Location:74 → 278
      DEADc_DDX54; DEAD-box helicase domain of DEAD box protein 54
      pfam08147
      Location:683 → 743
      DBP10CT; DBP10CT (NUC160) domain
      cl17169
      Location:509 → 600
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_039505222.1 → XP_039361156.1  ATP-dependent RNA helicase DDX54 isoform X5

      Conserved Domains (4) summary
      COG0513
      Location:49 → 515
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      cd17959
      Location:73 → 277
      DEADc_DDX54; DEAD-box helicase domain of DEAD box protein 54
      pfam08147
      Location:682 → 742
      DBP10CT; DBP10CT (NUC160) domain
      cl17169
      Location:508 → 599
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_039505218.1 → XP_039361152.1  ATP-dependent RNA helicase DDX54 isoform X1

      Conserved Domains (4) summary
      COG0513
      Location:52 → 518
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      cd17959
      Location:76 → 280
      DEADc_DDX54; DEAD-box helicase domain of DEAD box protein 54
      pfam08147
      Location:685 → 745
      DBP10CT; DBP10CT (NUC160) domain
      cl17169
      Location:511 → 602
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_039505220.1 → XP_039361154.1  ATP-dependent RNA helicase DDX54 isoform X3

      Conserved Domains (4) summary
      COG0513
      Location:52 → 518
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      cd17959
      Location:76 → 280
      DEADc_DDX54; DEAD-box helicase domain of DEAD box protein 54
      pfam08147
      Location:680 → 740
      DBP10CT; DBP10CT (NUC160) domain
      cl17169
      Location:511 → 597
      RRM_SF; RNA recognition motif (RRM) superfamily

    5. XM_039505219.1 → XP_039361153.1  ATP-dependent RNA helicase DDX54 isoform X2

      Conserved Domains (4) summary
      COG0513
      Location:51 → 517
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      cd17959
      Location:75 → 279
      DEADc_DDX54; DEAD-box helicase domain of DEAD box protein 54
      pfam08147
      Location:684 → 744
      DBP10CT; DBP10CT (NUC160) domain
      cl17169
      Location:510 → 601
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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