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    Sema5c Semaphorin 5c [ Solenopsis invicta (red fire ant) ]

    Gene ID: 105203081, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Sema5c
    Gene description
    Semaphorin 5c
    Locus tag
    SINV_00893
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solenopsis invicta
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Solenopsis
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See Sema5c in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    104 current UNIL_Sinv_3.0 (GCF_016802725.1) 16 NC_052679.1 (17452227..17569874)
    103 previous assembly Si_gnH (GCF_000188075.2) Unplaced Scaffold NW_020521556.1 (1225362..1329433)

    Chromosome 16 - NC_052679.1Genomic Context describing neighboring genes Neighboring gene atrial natriuretic peptide receptor 1 Neighboring gene proclotting enzyme Neighboring gene uncharacterized LOC113003610 Neighboring gene uncharacterized LOC105203080 Neighboring gene cysteine sulfinic acid decarboxylase Neighboring gene uncharacterized LOC105207526 Neighboring gene uncharacterized LOC105207609

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the fire ant Solenopsis invicta. Wurm Y, et al. Proc Natl Acad Sci U S A, 2011 Apr 5. PMID 21282665, Free PMC Article
    2. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-5B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solenopsis invicta Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UNIL_Sinv_3.0

    Genomic

    1. NC_052679.1 Reference UNIL_Sinv_3.0

      Range
      17452227..17569874
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039459074.1 → XP_039315008.1  semaphorin-5B isoform X2

      Conserved Domains (3) summary
      cd11265
      Location:38 → 467
      Sema_5C; The Sema domain, a protein interacting module, of semaphorin 5C (sema5C)
      smart00209
      Location:666 → 717
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:469 → 516
      PSI; Plexin repeat

    2. XM_039459075.1 → XP_039315009.1  semaphorin-5B isoform X2

      Conserved Domains (3) summary
      cd11265
      Location:38 → 467
      Sema_5C; The Sema domain, a protein interacting module, of semaphorin 5C (sema5C)
      smart00209
      Location:666 → 717
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:469 → 516
      PSI; Plexin repeat

    3. XM_011171836.3 → XP_011170138.2  semaphorin-5B isoform X2

      Conserved Domains (3) summary
      cd11265
      Location:38 → 467
      Sema_5C; The Sema domain, a protein interacting module, of semaphorin 5C (sema5C)
      smart00209
      Location:666 → 717
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:469 → 516
      PSI; Plexin repeat

    4. XM_039459073.1 → XP_039315007.1  semaphorin-5B isoform X1

      Conserved Domains (3) summary
      cd11265
      Location:65 → 468
      Sema_5C; The Sema domain, a protein interacting module, of semaphorin 5C (sema5C)
      smart00209
      Location:667 → 718
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:470 → 517
      PSI; Plexin repeat
    Nucleotide Protein
    Heading Accession and Version

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