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    Cobl cordon-bleu WH2 repeat protein [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

    Gene ID: 101961865, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Cobl
    Gene description
    cordon-bleu WH2 repeat protein
    Locus tag
    H1C71_005158
    See related
    EnsemblRapid:ENSSTOG00015004965
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ictidomys tridecemlineatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
    Orthologs
    human mouse all
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    Genomic context

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    See Cobl in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405118.1 (105650726..105902001, complement)
    102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936686.1 (621502..872824)

    NW_024405118.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120891996 Neighboring gene U6 spliceosomal RNA Neighboring gene growth factor receptor bound protein 10 Neighboring gene dimethyladenosine transferase 1, mitochondrial-like Neighboring gene putative DENN domain-containing protein 10 B Neighboring gene uncharacterized LOC120891678

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin monomer binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament network formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in actin filament polymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in axonal growth cone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in dendritic growth cone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuronal cell body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ruffle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in terminal web IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein cordon-bleu

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HiC_Itri_2 Primary Assembly

    Genomic

    1. NW_024405118.1 Reference HiC_Itri_2 Primary Assembly

      Range
      105650726..105902001 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040291954.1 → XP_040147888.1  protein cordon-bleu isoform X3

      Conserved Domains (1) summary
      pfam09469
      Location:150 → 226
      Cobl; Cordon-bleu ubiquitin-like domain

    2. XM_040291958.1 → XP_040147892.1  protein cordon-bleu isoform X7

      Related
      ENSSTOP00015006092.1, ENSSTOT00015006738.1
      Conserved Domains (1) summary
      pfam09469
      Location:150 → 226
      Cobl; Cordon-bleu ubiquitin-like domain

    3. XM_040291953.1 → XP_040147887.1  protein cordon-bleu isoform X2

      Related
      ENSSTOP00015006094.1, ENSSTOT00015006740.1
      Conserved Domains (1) summary
      pfam09469
      Location:143 → 219
      Cobl; Cordon-bleu ubiquitin-like domain

    4. XM_040291959.1 → XP_040147893.1  protein cordon-bleu isoform X8

      Conserved Domains (1) summary
      pfam09469
      Location:150 → 228
      Cobl; Cordon-bleu ubiquitin-like domain

    5. XM_040291956.1 → XP_040147890.1  protein cordon-bleu isoform X5

      Conserved Domains (1) summary
      pfam09469
      Location:150 → 226
      Cobl; Cordon-bleu ubiquitin-like domain

    6. XM_040291952.1 → XP_040147886.1  protein cordon-bleu isoform X1

      Conserved Domains (1) summary
      pfam09469
      Location:150 → 226
      Cobl; Cordon-bleu ubiquitin-like domain

    7. XM_040291960.1 → XP_040147894.1  protein cordon-bleu isoform X9

    8. XM_040291957.1 → XP_040147891.1  protein cordon-bleu isoform X6

      Related
      ENSSTOP00015006090.1, ENSSTOT00015006736.1
      Conserved Domains (1) summary
      pfam09469
      Location:150 → 228
      Cobl; Cordon-bleu ubiquitin-like domain

    9. XM_040291955.1 → XP_040147889.1  protein cordon-bleu isoform X4

      Related
      ENSSTOP00015006088.1, ENSSTOT00015006734.1
      Conserved Domains (1) summary
      pfam09469
      Location:150 → 228
      Cobl; Cordon-bleu ubiquitin-like domain
    Nucleotide Protein
    Heading Accession and Version

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