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    Rd3l RD3 like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 314467, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rd3lprovided by RGD
    Official Full Name
    RD3 likeprovided by RGD
    Primary source
    RGD:1305627
    See related
    EnsemblRapid:ENSRNOG00000043031 AllianceGenome:RGD:1305627
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1305627
    Summary
    Orthologous to human RD3L (RD3 like). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 103.2), Thymus (RPKM 84.5) and 4 other tissues See more
    Orthologs
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    Genomic context

    See Rd3l in Genome Data Viewer
    Location:
    6q32
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (136863424..136865328, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (131042274..131044178, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (136548412..136550316, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene ATP synthase membrane subunit g, pseudogene 4 Neighboring gene tudor domain containing 9 Neighboring gene fibrillarin, pseudogene 3 Neighboring gene asparaginase

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    protein RD3-like
    Names
    retinal degeneration 3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134560.1NP_001128032.1  protein RD3-like

      See identical proteins and their annotated locations for NP_001128032.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474034
      UniProtKB/TrEMBL
      A6KBU4, D3ZFH4
      Related
      ENSRNOP00000062701.1, ENSRNOT00000065971.4
      Conserved Domains (1) summary
      pfam14473
      Location:16131
      RD3; RD3 protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      136863424..136865328 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)