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    HMBOX1 homeobox containing 1 [ Hyaena hyaena (striped hyena) ]

    Gene ID: 120220157, updated on 21-Mar-2024

    Summary

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    Gene symbol
    HMBOX1
    Gene description
    homeobox containing 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hyaena hyaena
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Hyaenidae; Hyaena
    Orthologs
    human mouse all
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    Genomic context

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    See HMBOX1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current ASM300989v1 (GCF_003009895.1) Unplaced Scaffold NW_024081305.1 (290027..470333, complement)

    NW_024081305.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120220153 Neighboring gene kinesin family member 13B Neighboring gene U2 spliceosomal RNA Neighboring gene integrator complex subunit 9 Neighboring gene U4 spliceosomal RNA Neighboring gene exostosin like glycosyltransferase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024081305 Unplaced Scaffold Reference ASM300989v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hyaena hyaena Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM300989v1 Primary Assembly

    Genomic

    1. NW_024081305.1 Reference ASM300989v1 Primary Assembly

      Range
      290027..470333 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039217175.1 → XP_039073106.1  homeobox-containing protein 1 isoform X1

      Conserved Domains (2) summary
      cd00086
      Location:268 → 340
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:25 → 227
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus

    2. XM_039217176.1 → XP_039073107.1  homeobox-containing protein 1 isoform X2

      Conserved Domains (2) summary
      cd00086
      Location:268 → 340
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:25 → 227
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus

    3. XM_039217174.1 → XP_039073105.1  homeobox-containing protein 1 isoform X1

      Conserved Domains (2) summary
      cd00086
      Location:268 → 340
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:25 → 227
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus

    4. XM_039217181.1 → XP_039073112.1  homeobox-containing protein 1 isoform X6

      Conserved Domains (2) summary
      cd00086
      Location:268 → 340
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:25 → 227
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus

    5. XM_039217177.1 → XP_039073108.1  homeobox-containing protein 1 isoform X3

      Conserved Domains (2) summary
      cd00086
      Location:263 → 335
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:20 → 222
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus

    6. XM_039217178.1 → XP_039073109.1  homeobox-containing protein 1 isoform X4

      Conserved Domains (2) summary
      cd00086
      Location:256 → 328
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:13 → 215
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus

    7. XM_039217179.1 → XP_039073110.1  homeobox-containing protein 1 isoform X5

      Conserved Domains (2) summary
      cd00086
      Location:268 → 340
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:25 → 227
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
    Nucleotide Protein
    Heading Accession and Version

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