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    Spatc1 spermatogenesis and centriole associated 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 315091, updated on 9-Dec-2024

    Summary

    Official Symbol
    Spatc1provided by RGD
    Official Full Name
    spermatogenesis and centriole associated 1provided by RGD
    Primary source
    RGD:1565316
    See related
    EnsemblRapid:ENSRNOG00000029590 AllianceGenome:RGD:1565316
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565316
    Summary
    Predicted to enable gamma-tubulin binding activity. Predicted to be located in cytoplasm. Predicted to be active in centrosome. Orthologous to human SPATC1 (spermatogenesis and centriole associated 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 132.6) and Kidney (RPKM 75.5) See more
    Orthologs
    NEW
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    Genomic context

    See Spatc1 in Genome Data Viewer
    Location:
    7q34
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (109863794..109888145)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (107980857..108007716)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (117326279..117349957)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene plectin Neighboring gene poly (ADP-ribose) polymerase family, member 10 Neighboring gene uncharacterized LOC120093816 Neighboring gene glutamate ionotropic receptor NMDA type subunit associated protein 1 Neighboring gene transfer RNA leucine (anticodon AAG) 12 Neighboring gene sphingomyelin phosphodiesterase 5 Neighboring gene 5-oxoprolinase (ATP-hydrolysing) Neighboring gene exosome component 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables gamma-tubulin binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001115026.1NP_001108498.1  speriolin

      See identical proteins and their annotated locations for NP_001108498.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473950
      UniProtKB/TrEMBL
      A6HS75, B0BMZ4, F7EX86
      Related
      ENSRNOP00000041285.3, ENSRNOT00000050522.5
      Conserved Domains (2) summary
      pfam15058
      Location:1256
      Speriolin_N; Speriolin N terminus
      pfam15059
      Location:326472
      Speriolin_C; Speriolin C-terminus

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      109863794..109888145
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039079242.2XP_038935170.1  speriolin isoform X2

      Conserved Domains (2) summary
      pfam15058
      Location:141
      Speriolin_N; Speriolin N-terminus
      pfam15059
      Location:181327
      Speriolin_C; Speriolin C-terminus
    2. XM_039079239.2XP_038935167.1  speriolin isoform X1

      Conserved Domains (2) summary
      pfam15058
      Location:2175
      Speriolin_N; Speriolin N-terminus
      pfam15059
      Location:245391
      Speriolin_C; Speriolin C-terminus
    3. XM_039079240.2XP_038935168.1  speriolin isoform X1

      Conserved Domains (2) summary
      pfam15058
      Location:2175
      Speriolin_N; Speriolin N-terminus
      pfam15059
      Location:245391
      Speriolin_C; Speriolin C-terminus