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    LOC120054202 activating molecule in BECN1-regulated autophagy protein 1-like [ Salvelinus namaycush (lake trout) ]

    Gene ID: 120054202, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120054202
    Gene description
    activating molecule in BECN1-regulated autophagy protein 1-like
    See related
    EnsemblRapid:ENSSNMG00000030508
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salvelinus namaycush
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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    Genomic context

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    See LOC120054202 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current SaNama_1.0 (GCF_016432855.1) 9 NC_052315.1 (54283652..54322661, complement)

    Chromosome 9 - NC_052315.1Genomic Context describing neighboring genes Neighboring gene PHD finger protein 21A-like Neighboring gene midkine-A-like Neighboring gene protein fem-1 homolog B-like Neighboring gene tyrosine-protein kinase CSK-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052315.1 Chromosome 9 Reference SaNama_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    activating molecule in BECN1-regulated autophagy protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SaNama_1.0 Primary Assembly

    Genomic

    1. NC_052315.1 Reference SaNama_1.0 Primary Assembly

      Range
      54283652..54322661 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039001659.1 → XP_038857587.1  activating molecule in BECN1-regulated autophagy protein 1-like isoform X2

      UniProtKB/TrEMBL
      A0A8U1BQP2
      Related
      ENSSNMP00000043258.1, ENSSNMT00000047950.1
      Conserved Domains (4) summary
      PHA03269
      Location:641 → 765
      PHA03269; envelope glycoprotein C; Provisional
      PRK10263
      Location:310 → 422
      PRK10263; DNA translocase FtsK; Provisional
      sd00039
      Location:59 → 92
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:59 → 198
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_039001658.1 → XP_038857586.1  activating molecule in BECN1-regulated autophagy protein 1-like isoform X1

      UniProtKB/TrEMBL
      A0A8U1BI69
      Conserved Domains (4) summary
      PHA03269
      Location:641 → 765
      PHA03269; envelope glycoprotein C; Provisional
      PRK10263
      Location:310 → 422
      PRK10263; DNA translocase FtsK; Provisional
      sd00039
      Location:59 → 92
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:59 → 198
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_039001660.1 → XP_038857588.1  activating molecule in BECN1-regulated autophagy protein 1-like isoform X3

      UniProtKB/TrEMBL
      A0A8U1BX57
      Conserved Domains (2) summary
      PHA03269
      Location:427 → 551
      PHA03269; envelope glycoprotein C; Provisional
      PRK10263
      Location:96 → 208
      PRK10263; DNA translocase FtsK; Provisional
    Nucleotide Protein
    Heading Accession and Version

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