U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC120054197 HMG box-containing protein 1-like [ Salvelinus namaycush (lake trout) ]

    Gene ID: 120054197, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC120054197
    Gene description
    HMG box-containing protein 1-like
    See related
    EnsemblRapid:ENSSNMG00000030501
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salvelinus namaycush
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC120054197 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current SaNama_1.0 (GCF_016432855.1) 9 NC_052315.1 (53915164..53923793)

    Chromosome 9 - NC_052315.1Genomic Context describing neighboring genes Neighboring gene endoplasmin-like Neighboring gene cAMP-dependent protein kinase type II-beta regulatory subunit-like Neighboring gene sorting nexin-33-like Neighboring gene tyrosine-protein phosphatase non-receptor type 9-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_052315.1 Chromosome 9 Reference SaNama_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    HMG box-containing protein 1-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SaNama_1.0 Primary Assembly

    Genomic

    1. NC_052315.1 Reference SaNama_1.0 Primary Assembly

      Range
      53915164..53923793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039001651.1 → XP_038857579.1  HMG box-containing protein 1-like isoform X1

      UniProtKB/TrEMBL
      A0A8U1BYG7
      Conserved Domains (2) summary
      cd01388
      Location:410 → 481
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam08517
      Location:200 → 324
      AXH; Ataxin-1 and HBP1 module (AXH)

    2. XM_039001652.1 → XP_038857580.1  HMG box-containing protein 1-like isoform X2

      UniProtKB/TrEMBL
      A0A8U1ENG2
      Related
      ENSSNMP00000043190.1, ENSSNMT00000047882.1
      Conserved Domains (2) summary
      cd01388
      Location:410 → 481
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam08517
      Location:200 → 324
      AXH; Ataxin-1 and HBP1 module (AXH)

    3. XM_039001653.1 → XP_038857581.1  HMG box-containing protein 1-like isoform X3

      UniProtKB/TrEMBL
      A0A8U1ETM7
      Conserved Domains (2) summary
      cd01388
      Location:396 → 467
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam08517
      Location:186 → 310
      AXH; Ataxin-1 and HBP1 module (AXH)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases