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    LOC120063406 V-set and immunoglobulin domain-containing protein 10-like [ Salvelinus namaycush (lake trout) ]

    Gene ID: 120063406, updated on 7-Dec-2023

    Summary

    Gene symbol
    LOC120063406
    Gene description
    V-set and immunoglobulin domain-containing protein 10-like
    See related
    EnsemblRapid:ENSSNMG00000013247
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salvelinus namaycush
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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    Genomic context

    See LOC120063406 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current SaNama_1.0 (GCF_016432855.1) 18 NC_052324.1 (36936084..36945499, complement)

    Chromosome 18 - NC_052324.1Genomic Context describing neighboring genes Neighboring gene glycine-rich RNA-binding protein GRP1A-like Neighboring gene replication factor C subunit 5-like Neighboring gene serine/threonine-protein kinase TAO3-like Neighboring gene phosphatidylethanolamine binding protein 1 Neighboring gene enolase-phosphatase E1-like Neighboring gene transfer RNA tryptophan (anticodon CCA)

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_052324.1 Chromosome 18 Reference SaNama_1.0 Primary Assembly

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell adhesion molecule binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    V-set and immunoglobulin domain-containing protein 10-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SaNama_1.0 Primary Assembly

    Genomic

    1. NC_052324.1 Reference SaNama_1.0 Primary Assembly

      Range
      36936084..36945499 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039013772.1XP_038869700.1  V-set and immunoglobulin domain-containing protein 10-like isoform X2

      Conserved Domains (3) summary
      smart00409
      Location:89167
      IG; Immunoglobulin
      smart00410
      Location:277362
      IG_like; Immunoglobulin like
      cd00096
      Location:287294
      Ig; Ig strand B [structural motif]
    2. XM_039013771.1XP_038869699.1  V-set and immunoglobulin domain-containing protein 10-like isoform X1

      Related
      ENSSNMP00000016808.1, ENSSNMT00000019755.1
      Conserved Domains (3) summary
      smart00409
      Location:331416
      IG; Immunoglobulin
      pfam13927
      Location:28102
      Ig_3; Immunoglobulin domain
      cd00096
      Location:2730
      Ig; Ig strand A' [structural motif]

    RNA

    1. XR_005478494.1 RNA Sequence

    2. XR_005478493.1 RNA Sequence