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    ccnk cyclin K [ Scyliorhinus canicula (smaller spotted catshark) ]

    Gene ID: 119951442, updated on 21-Mar-2024

    Summary

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    Gene symbol
    ccnk
    Gene description
    cyclin K
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scyliorhinus canicula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
    Orthologs
    human zebrafish all
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    Genomic context

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    See ccnk in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current sScyCan1.1 (GCF_902713615.1) 2 NC_052147.1 (19959208..19989703, complement)

    Chromosome 2 - NC_052147.1Genomic Context describing neighboring genes Neighboring gene thyroid hormone receptor interactor 11 Neighboring gene coiled-coil domain containing 85C, a Neighboring gene peroxiredoxin-6-like Neighboring gene SET domain containing 3, actin histidine methyltransferase Neighboring gene BCL11 transcription factor B a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052147.1 Chromosome 2 Reference sScyCan1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription, elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cyclin/CDK positive transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-K

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sScyCan1.1 Primary Assembly

    Genomic

    1. NC_052147.1 Reference sScyCan1.1 Primary Assembly

      Range
      19959208..19989703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038774649.1 → XP_038630577.1  cyclin-K isoform X2

      Conserved Domains (3) summary
      PRK14950
      Location:279 → 385
      PRK14950; DNA polymerase III subunits gamma and tau; Provisional
      cd20530
      Location:40 → 154
      CYCLIN_CCNK_rpt1; first cyclin box found in cyclin-K (CCNK) and similar proteins
      cd20531
      Location:158 → 258
      CYCLIN_CCNK_rpt2; second cyclin box found in cyclin-K (CCNK) and similar proteins

    2. XM_038774642.1 → XP_038630570.1  cyclin-K isoform X1

      Conserved Domains (3) summary
      PRK14950
      Location:286 → 392
      PRK14950; DNA polymerase III subunits gamma and tau; Provisional
      cd20530
      Location:40 → 154
      CYCLIN_CCNK_rpt1; first cyclin box found in cyclin-K (CCNK) and similar proteins
      cd20531
      Location:158 → 265
      CYCLIN_CCNK_rpt2; second cyclin box found in cyclin-K (CCNK) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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